These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAAAAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATCCTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCGTACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAATTCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAGCTGGGGCTCGAA] [+] EMBL BM579164 [CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAAAAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATCCTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCGTACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAATTCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAGCTGGGGCTCGAA] consensusID : consensus_132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [CCGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAA] [+] EMBL BM642179 [CCGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_132#0 CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAA 60 consensus_132#1 ------------------------------------------------------------ consensus_132#0 AAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATC 120 consensus_132#1 ------------------------------------------------------------ consensus_132#0 CTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCG 180 consensus_132#1 ------------------------------------------------------------ consensus_132#0 TACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAAT 240 consensus_132#1 -----------------------------------------------------------C 1 consensus_132#0 TCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCAC 300 consensus_132#1 CGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCAC 61 ** ** * ********************************************** consensus_132#0 CACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGG 360 consensus_132#1 CACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCGG 121 ************************************** ********************* consensus_132#0 TGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGA 420 consensus_132#1 TGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGA 181 ************************************************************ consensus_132#0 GGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGAT 480 consensus_132#1 GGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGAT 241 ************************************************************ consensus_132#0 GTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAA 540 consensus_132#1 GTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAA 301 ************************************************************ consensus_132#0 CAAAAGGCCAC---------------AGCGGCTAACATCGCTGGAAAACTACATCATCAC 585 consensus_132#1 CAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCAC 361 *********** ********************************** consensus_132#0 GTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAG 645 consensus_132#1 GTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAA 421 *********************************************************** consensus_132#0 CTGGGGCTCGAA 657 consensus_132#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||