These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATTACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACTATACGAACAAAAAAAAACCCCATACATATCACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTAACACACAAACACACCGTCAGGCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTGTAGTAACCACCGCACGACGTTTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTTGCGAGGGTGCACAAATTGCCTCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGAAGTGTAACCGCAGTACGTGCATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATATATATATATACACACGCATATAACACAAAACAAAACAAAACAT] [+] EMBL BM647726 [CCGCGGACGCGTGGGCGGACGCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATTACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACTATACGAACAAAAAAAAACCCCATACATATCACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTAACACACAAACACACCGTCAGGCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTGTAGTAACCACCGCACGACGTTTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTTGCGAGGGTGCACAAATTGCCTCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGAAGTGTAACCGCAGTACGTGCATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATATATATATATACACACGCATATAACACAAAACAAAACAAAACAT] consensusID : consensus_1323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAATCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACT] [+] EMBL BX613192 [GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAATCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1323#0 ----------------------------------------CCGCGGACGCGTGGGCGGAC 20 consensus_1323#1 GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAA 60 ** * * * * ** * consensus_1323#0 GCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAGCGGGTGAAGTCTGATTTTTG 80 consensus_1323#1 TCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTG 120 ** ****************** *********** ********************** consensus_1323#0 GACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGTAAAGCCGGAGGCGGAGTTAG 140 consensus_1323#1 GACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAG 180 **************** ************** * ************************** consensus_1323#0 CTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATTACACGCAAACGC 200 consensus_1323#1 CTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGC 240 *********************************************** ************ consensus_1323#0 ACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTGAGTTGTGTGAATTGAGCGGT 260 consensus_1323#1 ACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGT 300 ************************ ****** **************************** consensus_1323#0 ATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAAT 320 consensus_1323#1 ATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAAT 360 ************************************************************ consensus_1323#0 TGATTACTGGAAAAGTATTACTAGACAAACTATACGAACAAAAAAAAACCCCATACATAT 380 consensus_1323#1 TGATTACTGGAAAAGTATTACTAGACAAACT----------------------------- 391 ******************************* consensus_1323#0 CACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTAACACACAAACACACCGTCAG 440 consensus_1323#1 ------------------------------------------------------------ consensus_1323#0 GCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTGTAGTAACCACCGCACGACGT 500 consensus_1323#1 ------------------------------------------------------------ consensus_1323#0 TTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTTGCGAGGGTGCACAAATTGCC 560 consensus_1323#1 ------------------------------------------------------------ consensus_1323#0 TCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGAAGTGTAACCGCAGTACGTGC 620 consensus_1323#1 ------------------------------------------------------------ consensus_1323#0 ATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATATATATATATACACACGCATA 680 consensus_1323#1 ------------------------------------------------------------ consensus_1323#0 TAACACAAAACAAAACAAAACAT 703 consensus_1323#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||