cluster # 135

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Anopheles gambiae
cluster # 135 cluster # 135 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_135#0 length = 687 sequences # 1

consensus_135#1 length = 566 sequences # 1

consensusID : consensus_135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCCCACGCGTCCGCGATCGTGTTCTCCATGTCGCATAAACGCATCCGCCCGCCGCTGCATATGGTACACTCGGAGAACTGGCTAGTTTACTCATACTACAACGATAAGGCCCGTCGAACGGAAATGACTTCGATCGAACTGTACGAGGGCAAAACGCAAACGAACAGCACGGTTTGGAGCTCGCTGGATGCGCCGCCCCTGCCGATGGTGGAGCGCCAGTCCTACATCCTGCCGATGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTCTCATCGGGCTGACCACTGGAGCGGTGGCCGAAATGACGTGGGCGCTGCTGGATCCCCGCCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGAGCTTCCGCTGCCGCACGAGATCCTCATCAACTACAACCAAACGGTGACGCACATCCGGGGCATACACACGGCGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACGGGCTCGATCTGTTTGTGACGCGCGTTTCGCCCTCGAAAACGTTCGACCTGCTGAAGGAGGACTTTGACTACTTCCTCATCACGGTCGTGCTGGTGGTGCTGACCACCACCTCCTTTGTGGTGAACAGCTCGCCTCAAAAAAAGCTCGTCAAGCAGGCGT]

[+] EMBL BM627862             [CCGCCCACGCGTCCGCGATCGTGTTCTCCATGTCGCATAAACGCATCCGCCCGCCGCTGCATATGGTACACTCGGAGAACTGGCTAGTTTACTCATACTACAACGATAAGGCCCGTCGAACGGAAATGACTTCGATCGAACTGTACGAGGGCAAAACGCAAACGAACAGCACGGTTTGGAGCTCGCTGGATGCGCCGCCCCTGCCGATGGTGGAGCGCCAGTCCTACATCCTGCCGATGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTCTCATCGGGCTGACCACTGGAGCGGTGGCCGAAATGACGTGGGCGCTGCTGGATCCCCGCCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGAGCTTCCGCTGCCGCACGAGATCCTCATCAACTACAACCAAACGGTGACGCACATCCGGGGCATACACACGGCGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACGGGCTCGATCTGTTTGTGACGCGCGTTTCGCCCTCGAAAACGTTCGACCTGCTGAAGGAGGACTTTGACTACTTCCTCATCACGGTCGTGCTGGTGGTGCTGACCACCACCTCCTTTGTGGTGAACAGCTCGCCTCAAAAAAAGCTCGTCAAGCAGGCGT]




>consensus_135#0
CCGCCCACGCGTCCGCGATCGTGTTCTCCATGTCGCATAAACGCATCCGCCCGCCGCTGC
ATATGGTACACTCGGAGAACTGGCTAGTTTACTCATACTACAACGATAAGGCCCGTCGAA
CGGAAATGACTTCGATCGAACTGTACGAGGGCAAAACGCAAACGAACAGCACGGTTTGGA
GCTCGCTGGATGCGCCGCCCCTGCCGATGGTGGAGCGCCAGTCCTACATCCTGCCGATGG
CCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTCTCA
TCGGGCTGACCACTGGAGCGGTGGCCGAAATGACGTGGGCGCTGCTGGATCCCCGCCGGC
CCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGAGCTTC
CGCTGCCGCACGAGATCCTCATCAACTACAACCAAACGGTGACGCACATCCGGGGCATAC
ACACGGCGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACGGGCTCGATCTGT
TTGTGACGCGCGTTTCGCCCTCGAAAACGTTCGACCTGCTGAAGGAGGACTTTGACTACT
TCCTCATCACGGTCGTGCTGGTGGTGCTGACCACCACCTCCTTTGTGGTGAACAGCTCGC
CTCAAAAAAAGCTCGTCAAGCAGGCGT

consensusID : consensus_135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [GGCAAGAATTCNCGCACGAGTGTNATCGAACTGTACGAGGGCACAACGCAAACGAACAGCACGGTTTGGAGCTCGCTGGATGCGCCGCCCCATGTCCGATGGTGGAGCGCCAGTCCTACATCCATGCCGATGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTCTCATCGTGGCTGACCACTTGGAGCGGTGGCCGAAATGACGTGGGCCCTGCTGGATCCCCGCCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGAGCTTCCGCTGCCGGACGAGATCCTCATCAACTAGCAACCAAAGCGGTGAGCACANCATCCGGGGGCATACAACACGGACGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACGGGCCTCGATCTAGTANGTCGTGACGCGCGTTTCGCCCTCGAAAAACGTTCGACCTGCTGAAGGAGGACTTTGACTACTTCCGTCATCACGGTCGTGCTGGGTGGTGCTGACCACCAAGCCTCCTTATGTAGGTGAA]

[+] EMBL BX468051             [GGCAAGAATTCNCGCACGAGTGTNATCGAACTGTACGAGGGCACAACGCAAACGAACAGCACGGTTTGGAGCTCGCTGGATGCGCCGCCCCATGTCCGATGGTGGAGCGCCAGTCCTACATCCATGCCGATGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTCTCATCGTGGCTGACCACTTGGAGCGGTGGCCGAAATGACGTGGGCCCTGCTGGATCCCCGCCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGAGCTTCCGCTGCCGGACGAGATCCTCATCAACTAGCAACCAAAGCGGTGAGCACANCATCCGGGGGCATACAACACGGACGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACGGGCCTCGATCTAGTANGTCGTGACGCGCGTTTCGCCCTCGAAAAACGTTCGACCTGCTGAAGGAGGACTTTGACTACTTCCGTCATCACGGTCGTGCTGGGTGGTGCTGACCACCAAGCCTCCTTATGTAGGTGAA]




>consensus_135#1
GGCAAGAATTCNCGCACGAGTGTNATCGAACTGTACGAGGGCACAACGCAAACGAACAGC
ACGGTTTGGAGCTCGCTGGATGCGCCGCCCCATGTCCGATGGTGGAGCGCCAGTCCTACA
TCCATGCCGATGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGC
AAACACATTCTCATCGTGGCTGACCACTTGGAGCGGTGGCCGAAATGACGTGGGCCCTGC
TGGATCCCCGCCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGT
ACATGCCGGAGCTTCCGCTGCCGGACGAGATCCTCATCAACTAGCAACCAAAGCGGTGAG
CACANCATCCGGGGGCATACAACACGGACGCCGTCCGGGCTGGAGAGCACCTGTCTGGTG
CTCGTGCACGGGCCTCGATCTAGTANGTCGTGACGCGCGTTTCGCCCTCGAAAAACGTTC
GACCTGCTGAAGGAGGACTTTGACTACTTCCGTCATCACGGTCGTGCTGGGTGGTGCTGA
CCACCAAGCCTCCTTATGTAGGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_135#0      CCGCCCACGCGTCCGCGATCGTGTTCTCCATGTCGCATAAACGCATCCGCCCGCCGCTGC 60
consensus_135#1      ------------------------------------------------------------
                                                                                 

consensus_135#0      ATATGGTACACTCGGAGAACTGGCTAGTTTACTCATACTACAACGATAAGGCCCGTCGAA 120
consensus_135#1      --------------------------------------------GGCAAGAATTCNCGCA 16
                                                                 *  ***      ** *

consensus_135#0      CGGAAATGACTTCGATCGAACTGTACGAGGGCAAAACGCAAACGAACAGCACGGTTTGGA 180
consensus_135#1      CGAGTGTNA------TCGAACTGTACGAGGGCACAACGCAAACGAACAGCACGGTTTGGA 70
                     **    * *      ****************** **************************

consensus_135#0      GCTCGCTGGATGCGCCGCCCC-TG-CCGATGGTGGAGCGCCAGTCCTACATCC-TGCCGA 237
consensus_135#1      GCTCGCTGGATGCGCCGCCCCATGTCCGATGGTGGAGCGCCAGTCCTACATCCATGCCGA 130
                     ********************* ** **************************** ******

consensus_135#0      TGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTC 297
consensus_135#1      TGGCCGTTGCCGCGCTGAAGGAAACCATCACCGAGAAGGGCATCACTAGCAAACACATTC 190
                     ************************************************************

consensus_135#0      TCATCG-GGCTGACCACT-GGAGCGGTGGCCGAAATGACGTGGGCGCTGCTGGATCCCCG 355
consensus_135#1      TCATCGTGGCTGACCACTTGGAGCGGTGGCCGAAATGACGTGGGCCCTGCTGGATCCCCG 250
                     ****** *********** ************************** **************

consensus_135#0      CCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGA 415
consensus_135#1      CCGGCCCGTCACCTCGCCGGAGAAGGCGCGCGAAGAGGGCATCGTGCCGTACATGCCGGA 310
                     ************************************************************

consensus_135#0      GCTTCCGCTGCCGCACGAGATCCTCATCAACTA-CAACCAAA-CGGTGA-CGCAC-ATCC 471
consensus_135#1      GCTTCCGCTGCCGGACGAGATCCTCATCAACTAGCAACCAAAGCGGTGAGCACANCATCC 370
                     ************* ******************* ******** ****** * **  ****

consensus_135#0      GGGG-CATACA-CACGG-CGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACG 528
consensus_135#1      GGGGGCATACAACACGGACGCCGTCCGGGCTGGAGAGCACCTGTCTGGTGCTCGTGCACG 430
                     **** ****** ***** ******************************************

consensus_135#0      GGC-TCGATCT----GTTTGTGACGCGCGTTTCGCCCTCGAAAA-CGTTCGACCTGCTGA 582
consensus_135#1      GGCCTCGATCTAGTANGTCGTGACGCGCGTTTCGCCCTCGAAAAACGTTCGACCTGCTGA 490
                     *** *******      * ************************* ***************

consensus_135#0      AGGAGGACTTTGACTACTTCC-TCATCACGGTCGTGCTGG-TGGTGCTGACCACCA--CC 638
consensus_135#1      AGGAGGACTTTGACTACTTCCGTCATCACGGTCGTGCTGGGTGGTGCTGACCACCAAGCC 550
                     ********************* ****************** ***************  **

consensus_135#0      TCCTT-TGT-GGTGAACAGCTCGCCTCAAAAAAAGCTCGTCAAGCAGGCGT 687
consensus_135#1      TCCTTATGTAGGTGAA----------------------------------- 566
                     ***** *** ******