cluster # 1358

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Anopheles gambiae
cluster # 1358 cluster # 1358 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1358#0 length = 621 sequences # 1

consensus_1358#1 length = 392 sequences # 1

consensusID : consensus_1358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAACACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGTAGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGTGTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTGTGTAAAGAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAATCCCTGCCAGTATAATCCCTCACCCAAGAGCAATGCATGTTGTTGTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTCGTGTCATTAATCAACTGCATACAGTTAATGCGTGAAGACACAAGCGCACAGCTTCTAAATGCAGGCCATTTTAAGAAGTCTTCGTGTCGACGCGCCA]

[+] EMBL BM647850             [CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAACACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGTAGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGTGTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTGTGTAAAGAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAATCCCTGCCAGTATAATCCCTCACCCAAGAGCAATGCATGTTGTTGTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTCGTGTCATTAATCAACTGCATACAGTTAATGCGTGAAGACACAAGCGCACAGCTTCTAAATGCAGGCCATTTTAAGAAGTCTTCGTGTCGACGCGCCA]




>consensus_1358#0
CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAAC
ACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGT
AGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGT
GTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTG
TGTAAAGAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTG
CTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGTGTGCATTGTAGCA
AATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCA
AAACAGCACAACACAATCCCTGCCAGTATAATCCCTCACCCAAGAGCAATGCATGTTGTT
GTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTCGTGTCATTAATCAACT
GCATACAGTTAATGCGTGAAGACACAAGCGCACAGCTTCTAAATGCAGGCCATTTTAAGA
AGTCTTCGTGTCGACGCGCCA

consensusID : consensus_1358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [GCAGAATCGCCACGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAGAGCAAGTGCATGTTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNTCCGTGTCATTAATCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTCTAAATGCAGGCCATTTTACNCGGAAGTCTTCG]

[+] EMBL BX466505             [GCAGAATCGCCACGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAGAGCAAGTGCATGTTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNTCCGTGTCATTAATCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTCTAAATGCAGGCCATTTTACNCGGAAGTCTTCG]




>consensus_1358#1
GCAGAATCGCCACGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCG
ATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGG
TGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATA
CGATGATTATTGCAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAG
AGCAAGTGCATGTTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNT
CCGTGTCATTAATCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTC
TAAATGCAGGCCATTTTACNCGGAAGTCTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1358#0      CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAAC 60
consensus_1358#1      ------------------------------------------------------------
                                                                                  

consensus_1358#0      ACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGT 120
consensus_1358#1      ------------------------------------------------------------
                                                                                  

consensus_1358#0      AGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGT 180
consensus_1358#1      ------------------------------------------------------------
                                                                                  

consensus_1358#0      GTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTG 240
consensus_1358#1      ------------------------------------------------GCAGAATCGCCA 12
                                                                      *  *  **    

consensus_1358#0      TGTAAAG-AAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCT 299
consensus_1358#1      CGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCT 72
                       *    * ****************************************************

consensus_1358#0      GCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGG-TGTGCATTGTAG 358
consensus_1358#1      GCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGGTGTGCATTGTAG 132
                      *********************************************** ************

consensus_1358#0      CAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTG 418
consensus_1358#1      CAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTG 192
                      ************************************************************

consensus_1358#0      CAAAACAGCACAACACAATCCC--TGCCAGTATAATCCCTCACCCAAGAGCAA-TGCATG 475
consensus_1358#1      CAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAGAGCAAGTGCATG 252
                      ******************  **  ***************************** ******

consensus_1358#0      TTGTTGTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTC-GTGTCATTAA 534
consensus_1358#1      TTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNTCCGTGTCATTAA 312
                      **** ************************ **************** ** **********

consensus_1358#0      TCAACTGCA-TACAGTTAA-TGCGTGAAGACACAAGCGCACAG-CTTCTAAATGCAGGCC 591
consensus_1358#1      TCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTCTAAATGCAGGCC 372
                      ********* ******* * *********************** ****************

consensus_1358#0      ATTTTA---AGAAGTCTTCGTGTCGACGCGCCA 621
consensus_1358#1      ATTTTACNCGGAAGTCTTCG------------- 392
                      ******    **********