cluster # 1360

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Anopheles gambiae
cluster # 1360 cluster # 1360 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1360#0 length = 1496 sequences # 1

consensus_1360#1 length = 528 sequences # 1

consensusID : consensus_1360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1496
fasta sequence

                              [GTCGCCGTGTTTGTGGCCTTCTTTGGCATCTTTTGGATCTACTTTCACTTCCGGCAGCGGTATCTGTTCTGGCTGAATCGCGATGTACCCTTCCTGGAGCCGACGTTCCCGTTTGGGAATATGATAGACATCTTCAATCCCAACATTCACTTTGCGCATCTCATCCAGAAGCTGTACCGACAGCTGAAGGATCGGGGTGACTATGTTGGACTTTTCTTCTTTCGCGATCCCGTGCTGCTTGTGCTGTCGCCCGAGTTCGCCCGGACGGTTATGGTGAAGGACTTTAACTACTTCGTCGATCGGGGTGTGTACAGTAATGAAGAGTTTGATCCACTGTCGGCGAACCTGTTCTTCATGGAGGGTGCCAAATGGCGAAAGCTACGATCGAAGCTAACACCAACCTTTACCTCCGGCAAGCTGAAGGCCATGTTCCACACCATTGTGGACGTAGCGAACCGGCTGGACCAGCATCTCGGTGAGCGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGACGTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCAACTCCCAGTTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTCTTTGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAACGACAAAGATGTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGTGTGCGGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGTGCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGTGGTTTTGAAACGTCCACGACCACGCTGACGTTTGCGCTACATTTGTTGGCGCAGCATCCGAAAGCGCAGCGGAAGGCCCGCAAGTGTGTGCGCAGTACACTGGCCAAGCACGGCAATGAGATGACGTACGAAGCGATTAAGGATATGTATTACCTTGAGTGTGTCATACACGAAACCCTGCGTCTTTACCCACCAGTTGCTTCCATCCATCGAATGACCTCCCAGCCCTACCAGCTTCCGAATGGAGAAGTCATCCCAGAGGGCGTCGGTGTGATCATCTCCAACCTTGCCTTCCAGCACGACCCAACCCTGTTTCCCGATCCGCTCGCCTTCAAACCGGAACGGTTCGAGGACAAAACGTTCGCCAAAACCAATCCAAGCTATTTGGCTTTCGGCGATGGGCCGCGGATGTGTATTGCGATGCGCTTTGGAAAGCTTCAGACGTGTCTTGGGTTGGCAATGTTGCTAAAAAGCTACACATTTAGCCTGGAAGATTGTGACGTGGACCGCCCGTTGCTCATTGATCCGATCAATCTGATGTATGGACCGGCCGGCCCAGTGTGGTTGAACGTGGAACGTTACGTAGAGGGTAGCAA]

[+] EMBL AY062207             [GTCGCCGTGTTTGTGGCCTTCTTTGGCATCTTTTGGATCTACTTTCACTTCCGGCAGCGGTATCTGTTCTGGCTGAATCGCGATGTACCCTTCCTGGAGCCGACGTTCCCGTTTGGGAATATGATAGACATCTTCAATCCCAACATTCACTTTGCGCATCTCATCCAGAAGCTGTACCGACAGCTGAAGGATCGGGGTGACTATGTTGGACTTTTCTTCTTTCGCGATCCCGTGCTGCTTGTGCTGTCGCCCGAGTTCGCCCGGACGGTTATGGTGAAGGACTTTAACTACTTCGTCGATCGGGGTGTGTACAGTAATGAAGAGTTTGATCCACTGTCGGCGAACCTGTTCTTCATGGAGGGTGCCAAATGGCGAAAGCTACGATCGAAGCTAACACCAACCTTTACCTCCGGCAAGCTGAAGGCCATGTTCCACACCATTGTGGACGTAGCGAACCGGCTGGACCAGCATCTCGGTGAGCGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGACGTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCAACTCCCAGTTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTCTTTGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAACGACAAAGATGTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGTGTGCGGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGTGCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGTGGTTTTGAAACGTCCACGACCACGCTGACGTTTGCGCTACATTTGTTGGCGCAGCATCCGAAAGCGCAGCGGAAGGCCCGCAAGTGTGTGCGCAGTACACTGGCCAAGCACGGCAATGAGATGACGTACGAAGCGATTAAGGATATGTATTACCTTGAGTGTGTCATACACGAAACCCTGCGTCTTTACCCACCAGTTGCTTCCATCCATCGAATGACCTCCCAGCCCTACCAGCTTCCGAATGGAGAAGTCATCCCAGAGGGCGTCGGTGTGATCATCTCCAACCTTGCCTTCCAGCACGACCCAACCCTGTTTCCCGATCCGCTCGCCTTCAAACCGGAACGGTTCGAGGACAAAACGTTCGCCAAAACCAATCCAAGCTATTTGGCTTTCGGCGATGGGCCGCGGATGTGTATTGCGATGCGCTTTGGAAAGCTTCAGACGTGTCTTGGGTTGGCAATGTTGCTAAAAAGCTACACATTTAGCCTGGAAGATTGTGACGTGGACCGCCCGTTGCTCATTGATCCGATCAATCTGATGTATGGACCGGCCGGCCCAGTGTGGTTGAACGTGGAACGTTACGTAGAGGGTAGCAA]




>consensus_1360#0
GTCGCCGTGTTTGTGGCCTTCTTTGGCATCTTTTGGATCTACTTTCACTTCCGGCAGCGG
TATCTGTTCTGGCTGAATCGCGATGTACCCTTCCTGGAGCCGACGTTCCCGTTTGGGAAT
ATGATAGACATCTTCAATCCCAACATTCACTTTGCGCATCTCATCCAGAAGCTGTACCGA
CAGCTGAAGGATCGGGGTGACTATGTTGGACTTTTCTTCTTTCGCGATCCCGTGCTGCTT
GTGCTGTCGCCCGAGTTCGCCCGGACGGTTATGGTGAAGGACTTTAACTACTTCGTCGAT
CGGGGTGTGTACAGTAATGAAGAGTTTGATCCACTGTCGGCGAACCTGTTCTTCATGGAG
GGTGCCAAATGGCGAAAGCTACGATCGAAGCTAACACCAACCTTTACCTCCGGCAAGCTG
AAGGCCATGTTCCACACCATTGTGGACGTAGCGAACCGGCTGGACCAGCATCTCGGTGAG
CGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGAC
GTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCAACTCCCAG
TTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTC
TTTGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAACGACAAAGAT
GTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGT
GTGCGGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGT
GCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGT
GGTTTTGAAACGTCCACGACCACGCTGACGTTTGCGCTACATTTGTTGGCGCAGCATCCG
AAAGCGCAGCGGAAGGCCCGCAAGTGTGTGCGCAGTACACTGGCCAAGCACGGCAATGAG
ATGACGTACGAAGCGATTAAGGATATGTATTACCTTGAGTGTGTCATACACGAAACCCTG
CGTCTTTACCCACCAGTTGCTTCCATCCATCGAATGACCTCCCAGCCCTACCAGCTTCCG
AATGGAGAAGTCATCCCAGAGGGCGTCGGTGTGATCATCTCCAACCTTGCCTTCCAGCAC
GACCCAACCCTGTTTCCCGATCCGCTCGCCTTCAAACCGGAACGGTTCGAGGACAAAACG
TTCGCCAAAACCAATCCAAGCTATTTGGCTTTCGGCGATGGGCCGCGGATGTGTATTGCG
ATGCGCTTTGGAAAGCTTCAGACGTGTCTTGGGTTGGCAATGTTGCTAAAAAGCTACACA
TTTAGCCTGGAAGATTGTGACGTGGACCGCCCGTTGCTCATTGATCCGATCAATCTGATG
TATGGACCGGCCGGCCCAGTGTGGTTGAACGTGGAACGTTACGTAGAGGGTAGCAA

consensusID : consensus_1360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [CGACCCACGCGTCCGGCTGAAGGCCATGTTCCACACCATTGTGGACGTAGCGACCCGGCTGGACCAGCATCTTGGCGAGCGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGACGTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCGGCTCCCAGTTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTCTTCGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAATGACAAAGATGTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGTGTGCAGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGTGCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGTGGATTTGAAACGTCCACGACCACGCTGAC]

[+] EMBL BM611105             [CGACCCACGCGTCCGGCTGAAGGCCATGTTCCACACCATTGTGGACGTAGCGACCCGGCTGGACCAGCATCTTGGCGAGCGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGACGTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCGGCTCCCAGTTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTCTTCGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAATGACAAAGATGTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGTGTGCAGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGTGCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGTGGATTTGAAACGTCCACGACCACGCTGAC]




>consensus_1360#1
CGACCCACGCGTCCGGCTGAAGGCCATGTTCCACACCATTGTGGACGTAGCGACCCGGCT
GGACCAGCATCTTGGCGAGCGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCT
AGCGCGCTTCATGACGGACGTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCT
GGAAAATCCCGGCTCCCAGTTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCT
GAAATCGCTCAAAGTGTTCTTCGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCAT
ACGCTACAATGACAAAGATGTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACG
CTATCGGGCCGAGAACGGTGTGCAGCGGGATGACTTCATGCAGCTGCTGATCGACATGAT
GCAGGAAAATGGTGCCGGTGCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGC
GTTTGTGTTCTTTTTCGGTGGATTTGAAACGTCCACGACCACGCTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1360#0      GTCGCCGTGTTTGTGGCCTTCTTTGGCATCTTTTGGATCTACTTTCACTTCCGGCAGCGG 60
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      TATCTGTTCTGGCTGAATCGCGATGTACCCTTCCTGGAGCCGACGTTCCCGTTTGGGAAT 120
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      ATGATAGACATCTTCAATCCCAACATTCACTTTGCGCATCTCATCCAGAAGCTGTACCGA 180
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      CAGCTGAAGGATCGGGGTGACTATGTTGGACTTTTCTTCTTTCGCGATCCCGTGCTGCTT 240
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      GTGCTGTCGCCCGAGTTCGCCCGGACGGTTATGGTGAAGGACTTTAACTACTTCGTCGAT 300
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      CGGGGTGTGTACAGTAATGAAGAGTTTGATCCACTGTCGGCGAACCTGTTCTTCATGGAG 360
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      GGTGCCAAATGGCGAAAGCTACGATCGAAGCTAACACCAACCTTTACCTCCGGCAAGCTG 420
consensus_1360#1      -------------------------------------CGACCCACGCGTCCGGC----TG 19
                                                           * ***    * ******    **

consensus_1360#0      AAGGCCATGTTCCACACCATTGTGGACGTAGCGAACCGGCTGGACCAGCATCTCGGTGAG 480
consensus_1360#1      AAGGCCATGTTCCACACCATTGTGGACGTAGCGACCCGGCTGGACCAGCATCTTGGCGAG 79
                      ********************************** ****************** ** ***

consensus_1360#0      CGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGAC 540
consensus_1360#1      CGGTGTGTCAGAATGCAGCGGATAGACATTAAAGAGCTGCTAGCGCGCTTCATGACGGAC 139
                      ************************************************************

consensus_1360#0      GTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCAACTCCCAG 600
consensus_1360#1      GTGATCGGTTCGTGTGCGTTCGGGATCGAGTGTAACACGCTGGAAAATCCCGGCTCCCAG 199
                      ***************************************************  *******

consensus_1360#0      TTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTC 660
consensus_1360#1      TTTCGACTGATGGGCAAGCGGATGATCAACCTACCGAAGCTGAAATCGCTCAAAGTGTTC 259
                      ************************************************************

consensus_1360#0      TTTGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAACGACAAAGAT 720
consensus_1360#1      TTCGCCATGATGTTCCGCAAGCAGGCCCAAGCACTCGGCATACGCTACAATGACAAAGAT 319
                      ** *********************************************** *********

consensus_1360#0      GTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGT 780
consensus_1360#1      GTGGCCGATTTCTTCATGAATGTCGTGCGGGACACCATACGCTATCGGGCCGAGAACGGT 379
                      ************************************************************

consensus_1360#0      GTGCGGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGT 840
consensus_1360#1      GTGCAGCGGGATGACTTCATGCAGCTGCTGATCGACATGATGCAGGAAAATGGTGCCGGT 439
                      **** *******************************************************

consensus_1360#0      GCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGT 900
consensus_1360#1      GCTGGTGAATCGCTCACGTTTGAGGAGATTGCCGCCCAGGCGTTTGTGTTCTTTTTCGGT 499
                      ************************************************************

consensus_1360#0      GGTTTTGAAACGTCCACGACCACGCTGACGTTTGCGCTACATTTGTTGGCGCAGCATCCG 960
consensus_1360#1      GGATTTGAAACGTCCACGACCACGCTGAC------------------------------- 528
                      ** **************************                               

consensus_1360#0      AAAGCGCAGCGGAAGGCCCGCAAGTGTGTGCGCAGTACACTGGCCAAGCACGGCAATGAG 1020
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      ATGACGTACGAAGCGATTAAGGATATGTATTACCTTGAGTGTGTCATACACGAAACCCTG 1080
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      CGTCTTTACCCACCAGTTGCTTCCATCCATCGAATGACCTCCCAGCCCTACCAGCTTCCG 1140
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      AATGGAGAAGTCATCCCAGAGGGCGTCGGTGTGATCATCTCCAACCTTGCCTTCCAGCAC 1200
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      GACCCAACCCTGTTTCCCGATCCGCTCGCCTTCAAACCGGAACGGTTCGAGGACAAAACG 1260
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      TTCGCCAAAACCAATCCAAGCTATTTGGCTTTCGGCGATGGGCCGCGGATGTGTATTGCG 1320
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      ATGCGCTTTGGAAAGCTTCAGACGTGTCTTGGGTTGGCAATGTTGCTAAAAAGCTACACA 1380
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      TTTAGCCTGGAAGATTGTGACGTGGACCGCCCGTTGCTCATTGATCCGATCAATCTGATG 1440
consensus_1360#1      ------------------------------------------------------------
                                                                                  

consensus_1360#0      TATGGACCGGCCGGCCCAGTGTGGTTGAACGTGGAACGTTACGTAGAGGGTAGCAA 1496
consensus_1360#1      --------------------------------------------------------