cluster # 1375

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1375 cluster # 1375 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1375#0 length = 661 sequences # 1

consensus_1375#1 length = 341 sequences # 1

consensusID : consensus_1375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [GGCAAGAATCCCCGAGGTTANCGCTACTCGTGTATGTACAAATNAATAGCAAAAAAGACCCGCCGTTAGATAATAATTTCTACACCCAATCAACAAGTGTACCTATATATACTATAGTACCCATGGGCATACGCAGAAGAGTGACGAAAACTGCATGGATAGTTACCACCGAAATTAATATTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTCTGAAACTGATCCAGAATACTCAGACTTAGCATGATCTATCTGACGGATAGTACTAGTATATTACAATAACGCTAAAAAATACTNGGTCGAATGTGTCTCCCACGGTAGATGNGGATGCTAGGCTGNGATTCTGGCAGTATATCTGTTNCATCGATATTCGTTGGCTCGGAACAGTTTCTAAAGCAGCTCTACAAACAAAAACCCGCTACCCGGACGCANCNCTGGGCCTTGCGACTGTGGTGCCGGCATCGGTAGAATCAGCCAAAAACCTACTTCTTGCCATGGTATTGACCAAGNTGAGATTACCTATGGGCTNACNCCACCCCAGCNGATGCACGACCAAACCCNTCCTCGCCCCCCACNCACCTNTGCCTCCGACTAACACCCAGCACANTATNCACCCCCNCAAACTAAATAANCCCCTACCACAAATATTGGGGAAACT]

[+] EMBL AL932080             [GGCAAGAATCCCCGAGGTTANCGCTACTCGTGTATGTACAAATNAATAGCAAAAAAGACCCGCCGTTAGATAATAATTTCTACACCCAATCAACAAGTGTACCTATATATACTATAGTACCCATGGGCATACGCAGAAGAGTGACGAAAACTGCATGGATAGTTACCACCGAAATTAATATTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTCTGAAACTGATCCAGAATACTCAGACTTAGCATGATCTATCTGACGGATAGTACTAGTATATTACAATAACGCTAAAAAATACTNGGTCGAATGTGTCTCCCACGGTAGATGNGGATGCTAGGCTGNGATTCTGGCAGTATATCTGTTNCATCGATATTCGTTGGCTCGGAACAGTTTCTAAAGCAGCTCTACAAACAAAAACCCGCTACCCGGACGCANCNCTGGGCCTTGCGACTGTGGTGCCGGCATCGGTAGAATCAGCCAAAAACCTACTTCTTGCCATGGTATTGACCAAGNTGAGATTACCTATGGGCTNACNCCACCCCAGCNGATGCACGACCAAACCCNTCCTCGCCCCCCACNCACCTNTGCCTCCGACTAACACCCAGCACANTATNCACCCCCNCAAACTAAATAANCCCCTACCACAAATATTGGGGAAACT]




>consensus_1375#0
GGCAAGAATCCCCGAGGTTANCGCTACTCGTGTATGTACAAATNAATAGCAAAAAAGACC
CGCCGTTAGATAATAATTTCTACACCCAATCAACAAGTGTACCTATATATACTATAGTAC
CCATGGGCATACGCAGAAGAGTGACGAAAACTGCATGGATAGTTACCACCGAAATTAATA
TTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTCTGAAACTGATCCAGAATACTCAGA
CTTAGCATGATCTATCTGACGGATAGTACTAGTATATTACAATAACGCTAAAAAATACTN
GGTCGAATGTGTCTCCCACGGTAGATGNGGATGCTAGGCTGNGATTCTGGCAGTATATCT
GTTNCATCGATATTCGTTGGCTCGGAACAGTTTCTAAAGCAGCTCTACAAACAAAAACCC
GCTACCCGGACGCANCNCTGGGCCTTGCGACTGTGGTGCCGGCATCGGTAGAATCAGCCA
AAAACCTACTTCTTGCCATGGTATTGACCAAGNTGAGATTACCTATGGGCTNACNCCACC
CCAGCNGATGCACGACCAAACCCNTCCTCGCCCCCCACNCACCTNTGCCTCCGACTAACA
CCCAGCACANTATNCACCCCCNCAAACTAAATAANCCCCTACCACAAATATTGGGGAAAC
T

consensusID : consensus_1375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [AATACTAACGCCGCTACCTCGTGTTTGTACAAATTAATAGCAAAAAAGACCCGCCGTTAGATAATAATTTCTACACCCAATCAACCAAGTGTTCCTTATATCTTAGTCCCATGGCATCGCAGAAGAGTGACGAAAACTGCATGGATAGTTCCACCGAAATTAATATTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTCGAAACGATCCAGAATACTCAGACTTAGATGATCTTCTGACGGATAGTACTAGTTATTACAATAACGCTAAAAAATACTGGTCGAATGTGTCTCCCACGGTAGATGGGATGCTAGGCGGATTCGGCAGTATATCGTTCATC]

[+] EMBL AGA285459            [AATACTAACGCCGCTACCTCGTGTTTGTACAAATTAATAGCAAAAAAGACCCGCCGTTAGATAATAATTTCTACACCCAATCAACCAAGTGTTCCTTATATCTTAGTCCCATGGCATCGCAGAAGAGTGACGAAAACTGCATGGATAGTTCCACCGAAATTAATATTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTCGAAACGATCCAGAATACTCAGACTTAGATGATCTTCTGACGGATAGTACTAGTTATTACAATAACGCTAAAAAATACTGGTCGAATGTGTCTCCCACGGTAGATGGGATGCTAGGCGGATTCGGCAGTATATCGTTCATC]




>consensus_1375#1
AATACTAACGCCGCTACCTCGTGTTTGTACAAATTAATAGCAAAAAAGACCCGCCGTTAG
ATAATAATTTCTACACCCAATCAACCAAGTGTTCCTTATATCTTAGTCCCATGGCATCGC
AGAAGAGTGACGAAAACTGCATGGATAGTTCCACCGAAATTAATATTCCTGCAGTACCAG
CTGAAAACAACGATCAAAGTCGAAACGATCCAGAATACTCAGACTTAGATGATCTTCTGA
CGGATAGTACTAGTTATTACAATAACGCTAAAAAATACTGGTCGAATGTGTCTCCCACGG
TAGATGGGATGCTAGGCGGATTCGGCAGTATATCGTTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1375#0      GGCAAGAATCCCCGAGGTTANCGCTACTCGTGTATGTACAAATNAATAGCAAAAAAGACC 60
consensus_1375#1      -------AATACTAACGCCGCTAC--CTCGTGTTTGTACAAATTAATAGCAAAAAAGACC 51
                             *   *  * *      *  ******* ********* ****************

consensus_1375#0      CGCCGTTAGATAATAATTTCTACACCCAATCAAC-AAGTGTACCTATATATACTATAGTA 119
consensus_1375#1      CGCCGTTAGATAATAATTTCTACACCCAATCAACCAAGTGTTCCT---TATATCTTAGT- 107
                      ********************************** ****** ***   ****   **** 

consensus_1375#0      CCCATGGGCATACGCAGAAGAGTGACGAAAACTGCATGGATAGTTACCACCGAAATTAAT 179
consensus_1375#1      CCCATGG-CAT-CGCAGAAGAGTGACGAAAACTGCATGGATAGTT-CCACCGAAATTAAT 164
                      ******* *** ********************************* **************

consensus_1375#0      ATTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTCTGAAACTGATCCAGAATACTCAG 239
consensus_1375#1      ATTCCTGCAGTACCAGCTGAAAACAACGATCAAAGTC-GAAAC-GATCCAGAATACTCAG 222
                      ************************************* ***** ****************

consensus_1375#0      ACTTAGCATGATCTATCTGACGGATAGTACTAGTATATTACAATAACGCTAAAAAATACT 299
consensus_1375#1      ACTTAG-ATGATCT-TCTGACGGATAGTACTAGT-TATTACAATAACGCTAAAAAATACT 279
                      ****** ******* ******************* *************************

consensus_1375#0      NGGTCGAATGTGTCTCCCACGGTAGATGNGGATGCTAGGCTGNGATTCTGGCAGTATATC 359
consensus_1375#1      GG-TCGAATGTGTCTCCCACGGTAGATGGG-ATGCTAGGC--GGATTC-GGCAGTATATC 334
                       * ************************* * *********   ***** ***********

consensus_1375#0      TGTTNCATCGATATTCGTTGGCTCGGAACAGTTTCTAAAGCAGCTCTACAAACAAAAACC 419
consensus_1375#1      G--TTCATC--------------------------------------------------- 341
                         * ****                                                   

consensus_1375#0      CGCTACCCGGACGCANCNCTGGGCCTTGCGACTGTGGTGCCGGCATCGGTAGAATCAGCC 479
consensus_1375#1      ------------------------------------------------------------
                                                                                  

consensus_1375#0      AAAAACCTACTTCTTGCCATGGTATTGACCAAGNTGAGATTACCTATGGGCTNACNCCAC 539
consensus_1375#1      ------------------------------------------------------------
                                                                                  

consensus_1375#0      CCCAGCNGATGCACGACCAAACCCNTCCTCGCCCCCCACNCACCTNTGCCTCCGACTAAC 599
consensus_1375#1      ------------------------------------------------------------
                                                                                  

consensus_1375#0      ACCCAGCACANTATNCACCCCCNCAAACTAAATAANCCCCTACCACAAATATTGGGGAAA 659
consensus_1375#1      ------------------------------------------------------------
                                                                                  

consensus_1375#0      CT 661
consensus_1375#1      --