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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence
[CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACGTACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACTTAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGGGCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAGAAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT]
[+] EMBL BX620124 [CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACGTACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACTTAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGGGCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAGAAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT]
consensusID : consensus_1388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGTATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCAGATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC]
[+] EMBL BX468874 [AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGTATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCAGATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1388#0 CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACG 60
consensus_1388#1 ------------------------------------------------------------
consensus_1388#0 TACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACT 120
consensus_1388#1 ------------------------------------------------------------
consensus_1388#0 TAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGG 180
consensus_1388#1 ------------------------------------------------------------
consensus_1388#0 GCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAG 240
consensus_1388#1 ----------AGGCAAGAATCGGCACGATGG--ATGAAGCACATCGCTATGCTGTCGTCC 48
** ****** ** * * ***** * * * *
consensus_1388#0 AAGATTTC---TTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGT 297
consensus_1388#1 TATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTG-TGTGTAGTTGTC-CGT 106
* ** * ** ** * ** * ** *** * * * ** **** ***
consensus_1388#0 GTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGT 357
consensus_1388#1 G-GTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGAT 165
* * ** * * * * * *** ** * * ** * * ** *
consensus_1388#0 GTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGT-TAGTGTTAACACTTTCCTCAGTG 416
consensus_1388#1 TTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAA-A 224
* * * * * ** * * * * **** ** * *
consensus_1388#0 GAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAA 476
consensus_1388#1 GAATGAAAATG------AAGGTATGGGGGA------AAAGACGCAGTATC--AATGATGA 270
***** * * * *** ** ** * * * * ** * ** * *
consensus_1388#0 ACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCC 536
consensus_1388#1 AATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTT 330
* * ** * * * ** * * **** * ****
consensus_1388#0 TTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTT 596
consensus_1388#1 ATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCA 390
* ** * * * * * ** ** * ** *** ** * ** * **
consensus_1388#0 TGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATA-- 654
consensus_1388#1 -ACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTT-CCTTTGGTATGCG 448
* *** * ** * * * * ** *** * ******
consensus_1388#0 GGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATG 714
consensus_1388#1 GACACTTTTACACCACTCTCCTCCCGGGAGCA--GATACTC-CAGGACAAGCTGATCCCC 505
* * * * **** * * *** **** * * * * *
consensus_1388#0 GTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT 754
consensus_1388#1 GTAAAGAGTTGTAAATCACAAAGTTACAC----------- 534
** * * ** * * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||