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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence
[CGCTCACCTGTACACAGTTCCACATTGTAGCAATAGAGGCTATGGTAGTACGTTAGTCAAAGCAATGACACATCTGATAGCACATGACCATAAACAGCATGTGCAAACATTCATTAGCTCAAATAATGAAAAGTCAATCCGAATATTTGAAAAACTTGGATTCCTACCAGTCAACAACATACAATGGTTAGTCATGGATTAAATTGAACTCACAAACATCGACAAAATTGCGTATCTTTCAGATGCAAAACTATATAATTACACTTTACTGCATTATCTACCTACAATACGATACCTATATGCGTATGCCCATATTTAGAACACCACTCATCTTATCAAGGCGAGCTTTACTGTTTTGACATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCTTTAAGAGGAGAACAAAAGGTCTTCTATTATATTTCATGTCCAACCTCATAGTTCCAACTCAATTATAATTTAGCCAAATATGGGACCTTTCACGATGCTAGCCAGCTTTTTATATGGAGATTGACATTTTGCGGCTGAAATTAGTTGNTGACAACTCCATACNAAACCACACACAAAACTAGCCTACGATTTTCAGCCTAGATTATTTCAGCCTCCAAGTTAGAATCAGATTTGAGTACCAGCTTGAAAAAT]
[+] EMBL BX626677 [CGCTCACCTGTACACAGTTCCACATTGTAGCAATAGAGGCTATGGTAGTACGTTAGTCAAAGCAATGACACATCTGATAGCACATGACCATAAACAGCATGTGCAAACATTCATTAGCTCAAATAATGAAAAGTCAATCCGAATATTTGAAAAACTTGGATTCCTACCAGTCAACAACATACAATGGTTAGTCATGGATTAAATTGAACTCACAAACATCGACAAAATTGCGTATCTTTCAGATGCAAAACTATATAATTACACTTTACTGCATTATCTACCTACAATACGATACCTATATGCGTATGCCCATATTTAGAACACCACTCATCTTATCAAGGCGAGCTTTACTGTTTTGACATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCTTTAAGAGGAGAACAAAAGGTCTTCTATTATATTTCATGTCCAACCTCATAGTTCCAACTCAATTATAATTTAGCCAAATATGGGACCTTTCACGATGCTAGCCAGCTTTTTATATGGAGATTGACATTTTGCGGCTGAAATTAGTTGNTGACAACTCCATACNAAACCACACACAAAACTAGCCTACGATTTTCAGCCTAGATTATTTCAGCCTCCAAGTTAGAATCAGATTTGAGTACCAGCTTGAAAAAT]
consensusID : consensus_1413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[CCGAGGCAATATGAAAAGTATCCGAATATTTGGAAAACTTGGATCCTACCAGTCACAACATACAAAGGTTAGTCATGGATTAAATTGAGACTCACACAACATCGNCAAAATTGGGGTATCTTTTCATATGCAGAAACTATATAATTACACTTTACTGGGATTATCTAACTACAATACGANANCCTAATTATGCCGTATGCCCATATTTAGAACACCACTCATCTTATCCAGGCCAGCTTACTGTGTTGANATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCGAGGATTGTACAAGAGGAGAACTAAAGGTCTACTATTCATATTTCATGTCCAAACTCATAGTTCCAACTCAATAATAATTTTGCCAAATAAGGGACCTTTCACGATGCTAGCCAGCTTTTTTATATGGAGATTGACATTTTGCCCGCTGAAAATCNGCTGTTGACAACTCC]
[+] EMBL AL931759 [CCGAGGCAATATGAAAAGTATCCGAATATTTGGAAAACTTGGATCCTACCAGTCACAACATACAAAGGTTAGTCATGGATTAAATTGAGACTCACACAACATCGNCAAAATTGGGGTATCTTTTCATATGCAGAAACTATATAATTACACTTTACTGGGATTATCTAACTACAATACGANANCCTAATTATGCCGTATGCCCATATTTAGAACACCACTCATCTTATCCAGGCCAGCTTACTGTGTTGANATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCGAGGATTGTACAAGAGGAGAACTAAAGGTCTACTATTCATATTTCATGTCCAAACTCATAGTTCCAACTCAATAATAATTTTGCCAAATAAGGGACCTTTCACGATGCTAGCCAGCTTTTTTATATGGAGATTGACATTTTGCCCGCTGAAAATCNGCTGTTGACAACTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1413#0 CGCTCACCTGTACACAGTTCCACATTGTAGCAATAGAGGCTATGGTAGTACGTTAGTCAA 60
consensus_1413#1 ------------------------------------------------------------
consensus_1413#0 AGCAATGACACATCTGATAGCACATGACCATAAACAGCATGTGCAAACATTCATTAGCTC 120
consensus_1413#1 ---------------------------------------------------------CCG 3
*
consensus_1413#0 AAATAATGAAAAGTCAATCCGAATATTTGAAAAACTTGGATTCCTACCAGTCAACAACAT 180
consensus_1413#1 AGGCAATATGAAAAGTATCCGAATATTTGGAAAACTTGGAT-CCTACCAGTCA-CAACAT 61
* *** ** ************* *********** *********** ******
consensus_1413#0 ACAATGGTTAGTCATGGATTAAATTGA-ACTCACA-AACATCGACAAAATTGCG-TATCT 237
consensus_1413#1 ACAAAGGTTAGTCATGGATTAAATTGAGACTCACACAACATCGNCAAAATTGGGGTATCT 121
**** ********************** ******* ******* ******** * *****
consensus_1413#0 TT-CAGATGCA-AAACTATATAATTACACTTTACTGC-ATTATCTACCTACAATACGATA 294
consensus_1413#1 TTTCATATGCAGAAACTATATAATTACACTTTACTGGGATTATCTAACTACAATACGANA 181
** ** ***** ************************ ******** *********** *
consensus_1413#0 CCTA---TATGC-GTATGCCCATATTTAGAACACCACTCATCTTATCAAGGCGAGCTTTA 350
consensus_1413#1 NCCTAATTATGCCGTATGCCCATATTTAGAACACCACTCATCTTATCCAGGCCAGCTT-A 240
* ***** ********************************** **** ***** *
consensus_1413#0 CTGTTTTGACATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAA 410
consensus_1413#1 CTGTGTTGANATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAA 300
**** **** **************************************************
consensus_1413#0 ATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGC- 469
consensus_1413#1 ATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCG 360
***********************************************************
consensus_1413#0 -------TTTAAGAGGAGAACAAAAGGTCTTCTATT-ATATTTCATGTCCAACCTCATAG 521
consensus_1413#1 AGGATTGTACAAGAGGAGAACTAAAGGTCTACTATTCATATTTCATGTCCAAACTCATAG 420
* *********** ******** ***** *************** *******
consensus_1413#0 TTCCAACTCAATTATAATTTAGCCAAATATGGGACCTTTCACGATGCTAGCCAGCTTTTT 581
consensus_1413#1 TTCCAACTCAATAATAATTTTGCCAAATAAGGGACCTTTCACGATGCTAGCCAGCTTTTT 480
************ ******* ******** ******************************
consensus_1413#0 -ATATGGAGATTGACATTTTGCG-GCTGAAA-TTAGTTGNTGACAACTCCATACNAAACC 638
consensus_1413#1 TATATGGAGATTGACATTTTGCCCGCTGAAAATCNGCTGTTGACAACTCC---------- 530
********************* ******* * * ** **********
consensus_1413#0 ACACACAAAACTAGCCTACGATTTTCAGCCTAGATTATTTCAGCCTCCAAGTTAGAATCA 698
consensus_1413#1 ------------------------------------------------------------
consensus_1413#0 GATTTGAGTACCAGCTTGAAAAAT 722
consensus_1413#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||