cluster # 142

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Anopheles gambiae
cluster # 142 cluster # 142 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_142#0 length = 538 sequences # 1

consensus_142#1 length = 136 sequences # 1

consensusID : consensus_142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [CGACCCACGCGTCCGGTCGCGTACAACGTCGGCAAGTTCCCGTTCGCGGCCAACTCGCGCGCCAAGACGAACAACGACACGGACGGCTTCGTGAAGGTGCTGGCCGACAAGCAGACGGATCGCGTGCTTGGCGTGCATATCATTGGACCGGCCGCTGGTGAGCTGATCAACGAGTCTGTCCTTGCCATGGAGTACGGTGCGTCCGCCGAGGACGTTGCCCGCGTCTGCCACGCTCACCCGACCTGCGCCGAAGCCCTGCGAGAGGCACACACAGCGGCCAGTTTCGGCAAGCCGATCAACTTCTAATTTGTAAAAAAAAAGAAACCACACACCCGCAACACAACCCCACTACCAGTTCAGCACCACCAGCAACACATCCATTTTTATGGTGAAGTAAAGCGAGCAAATAAGTGTGCAAACCTTACAGACGAACCGCCTTTTCCCTATCCCTCCCTTATGCGGGATGTCTCCTGAAACAACTCCTCGCCTTTCATTTTTCGGCACACCATCATCATGCGGGTGGGCGAGATAGGCGGAA]

[+] EMBL BM631482             [CGACCCACGCGTCCGGTCGCGTACAACGTCGGCAAGTTCCCGTTCGCGGCCAACTCGCGCGCCAAGACGAACAACGACACGGACGGCTTCGTGAAGGTGCTGGCCGACAAGCAGACGGATCGCGTGCTTGGCGTGCATATCATTGGACCGGCCGCTGGTGAGCTGATCAACGAGTCTGTCCTTGCCATGGAGTACGGTGCGTCCGCCGAGGACGTTGCCCGCGTCTGCCACGCTCACCCGACCTGCGCCGAAGCCCTGCGAGAGGCACACACAGCGGCCAGTTTCGGCAAGCCGATCAACTTCTAATTTGTAAAAAAAAAGAAACCACACACCCGCAACACAACCCCACTACCAGTTCAGCACCACCAGCAACACATCCATTTTTATGGTGAAGTAAAGCGAGCAAATAAGTGTGCAAACCTTACAGACGAACCGCCTTTTCCCTATCCCTCCCTTATGCGGGATGTCTCCTGAAACAACTCCTCGCCTTTCATTTTTCGGCACACCATCATCATGCGGGTGGGCGAGATAGGCGGAA]




>consensus_142#0
CGACCCACGCGTCCGGTCGCGTACAACGTCGGCAAGTTCCCGTTCGCGGCCAACTCGCGC
GCCAAGACGAACAACGACACGGACGGCTTCGTGAAGGTGCTGGCCGACAAGCAGACGGAT
CGCGTGCTTGGCGTGCATATCATTGGACCGGCCGCTGGTGAGCTGATCAACGAGTCTGTC
CTTGCCATGGAGTACGGTGCGTCCGCCGAGGACGTTGCCCGCGTCTGCCACGCTCACCCG
ACCTGCGCCGAAGCCCTGCGAGAGGCACACACAGCGGCCAGTTTCGGCAAGCCGATCAAC
TTCTAATTTGTAAAAAAAAAGAAACCACACACCCGCAACACAACCCCACTACCAGTTCAG
CACCACCAGCAACACATCCATTTTTATGGTGAAGTAAAGCGAGCAAATAAGTGTGCAAAC
CTTACAGACGAACCGCCTTTTCCCTATCCCTCCCTTATGCGGGATGTCTCCTGAAACAAC
TCCTCGCCTTTCATTTTTCGGCACACCATCATCATGCGGGTGGGCGAGATAGGCGGAA

consensusID : consensus_142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [GACACAGCGGTCCGCCGGGGAAATCCCGGACATCTCGAAAGCGAAACAGTCGCGCGGGGAGAAGAAGGCCCGCAAGATCAGGTCCAAGCTCGGGCGGAAGCCGGGCCAGGGCGTCAACCGGGTAACGATCCGGAAG]

[+] EMBL BX610405             [GACACAGCGGTCCGCCGGGGAAATCCCGGACATCTCGAAAGCGAAACAGTCGCGCGGGGAGAAGAAGGCCCGCAAGATCAGGTCCAAGCTCGGGCGGAAGCCGGGCCAGGGCGTCAACCGGGTAACGATCCGGAAG]




>consensus_142#1
GACACAGCGGTCCGCCGGGGAAATCCCGGACATCTCGAAAGCGAAACAGTCGCGCGGGGA
GAAGAAGGCCCGCAAGATCAGGTCCAAGCTCGGGCGGAAGCCGGGCCAGGGCGTCAACCG
GGTAACGATCCGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_142#0      CGACCCACGCGTCCGGTCGCGTACAACGTCGGCAAGTTCCCGTTCGCGGCCAACTCGCGC 60
consensus_142#1      -GACACA-GCGGTCCGCCGGGGAAATCCCGGACA---TCTCGAAAGCGAAACAGTCGCGC 55
                      *** ** ***  * * ** * * * *   * **   ** **   ***    * ******

consensus_142#0      GCCAAGACGAACAACGACACGGACGGCTTCGTGAAGGTGCTGGCCGACAAGCAGACGGAT 120
consensus_142#1      GGGGAGAAGAAGGCCCGCAAGATCAGGTCC----AAGCTCGGGCGGAAGCCGGGCCAGGG 111
                     *   *** ***   *  ** *  * * * *    * *  * *** **      * * *  

consensus_142#0      CGCGTGCTTGGCGTGCATATCATTGGACCGGCCGCTGGTGAGCTGATCAACGAGTCTGTC 180
consensus_142#1      CGTCAACCGGGTAACGATCCGGAAG----------------------------------- 136
                     **    *  **     **      *                                   

consensus_142#0      CTTGCCATGGAGTACGGTGCGTCCGCCGAGGACGTTGCCCGCGTCTGCCACGCTCACCCG 240
consensus_142#1      ------------------------------------------------------------
                                                                                 

consensus_142#0      ACCTGCGCCGAAGCCCTGCGAGAGGCACACACAGCGGCCAGTTTCGGCAAGCCGATCAAC 300
consensus_142#1      ------------------------------------------------------------
                                                                                 

consensus_142#0      TTCTAATTTGTAAAAAAAAAGAAACCACACACCCGCAACACAACCCCACTACCAGTTCAG 360
consensus_142#1      ------------------------------------------------------------
                                                                                 

consensus_142#0      CACCACCAGCAACACATCCATTTTTATGGTGAAGTAAAGCGAGCAAATAAGTGTGCAAAC 420
consensus_142#1      ------------------------------------------------------------
                                                                                 

consensus_142#0      CTTACAGACGAACCGCCTTTTCCCTATCCCTCCCTTATGCGGGATGTCTCCTGAAACAAC 480
consensus_142#1      ------------------------------------------------------------
                                                                                 

consensus_142#0      TCCTCGCCTTTCATTTTTCGGCACACCATCATCATGCGGGTGGGCGAGATAGGCGGAA 538
consensus_142#1      ----------------------------------------------------------