cluster # 1457

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1457 cluster # 1457 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1457#0 length = 683 sequences # 1

consensus_1457#1 length = 499 sequences # 1

consensusID : consensus_1457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGTCGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAAGCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCACCACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAAAGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCATGCAAGACCGTCAGGGACAACGGG]

[+] EMBL BM610053             [CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGTCGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAAGCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCACCACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAAAGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCATGCAAGACCGTCAGGGACAACGGG]




>consensus_1457#0
CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGT
CGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAA
GCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA
ACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCAC
CACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC
GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC
AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGG
GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT
AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC
GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAA
AGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCAT
GCAAGACCGTCAGGGACAACGGG

consensusID : consensus_1457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT]

[+] EMBL BM611507             [CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT]




>consensus_1457#1
CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCG
AAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCC
ATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAAT
GGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAG
GATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGC
CGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATT
CGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCA
CCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAAC
ACGGTGAACGCTCCCGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1457#0      CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGT 60
consensus_1457#1      ------------------------------------------------------------
                                                                                  

consensus_1457#0      CGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAA 120
consensus_1457#1      ---------------CCGCGGACGCGTGGGCGGAC---GCGTGGGGCGGAAACGAAAGAA 42
                                     **    *       **  **   *      ***************

consensus_1457#0      GCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA 180
consensus_1457#1      GCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA 102
                      *************** ********************************************

consensus_1457#0      ACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCAC 240
consensus_1457#1      ACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCAC 162
                      ************************** ***************** ***************

consensus_1457#0      CACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC 300
consensus_1457#1      CACCATCA------TCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC 216
                      ********      **********************************************

consensus_1457#0      GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC 360
consensus_1457#1      GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC 276
                      ************************************************************

consensus_1457#0      AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGG 420
consensus_1457#1      AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGG 336
                      ****************************************** *****************

consensus_1457#0      GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT 480
consensus_1457#1      GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT 396
                      ************************************************************

consensus_1457#0      AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC 540
consensus_1457#1      AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC 456
                      ************************************************************

consensus_1457#0      GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAA 600
consensus_1457#1      GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT----------------- 499
                      *******************************************                 

consensus_1457#0      AGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCAT 660
consensus_1457#1      ------------------------------------------------------------
                                                                                  

consensus_1457#0      GCAAGACCGTCAGGGACAACGGG 683
consensus_1457#1      -----------------------