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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 960 fasta sequence
[CAGAATCGGCACGAGGTATCAGCTAACATTGCCACAAAGCCGCCGATCGCCTCCTAATGAAATACGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGAGTAAGCAGGGAAGGGAACAAGAACCAAAACACGACACAACACGCGAATTGCCATCGGGGGAAAGCAGGAAAAATTTGGGTGCCGGTATTACATTATATTGTTTACTTATTGAAATTCCGAACACGTTCCGGTTAGAGTAAAACCAGGCCAGAAGTAACGGGCGGNCAAGTGGTTGGTGTTGCGGTGAGTTGCCAGGTTAGGGAACAAAATTACNGCCAAAGGCTTTANGAAAACCCAAANCCCATTACCCAGGAAAAGGGTTNAACAGGCCNACTATTACGTTTTTAGGAAACAAGGANAAAAAGGGAAAANACGGGCAACACACGGAANACAAGGGGGTTACAGGCAAGCGCAAGGAACGGGCGGNGCGGTTTACATAAAGTTGGTTGGGCAATTACCCAGGGTTGGGCCTGGANTTCCTTTGGAAAGGAACTTCCGGGCCTTAACCGAAAAAACAATTGGCGATACAAAACCGTTAATTAGGGTTTAGCTTGTTNCCAACCCGGGGGCCTTTAAGCAAAATTTAAAGCCCCCGTTGTACCCTTTAAGATCACCCGTTTCCGGACGAAACCGACNCGAAACGAGTCGTTCCCACCCAAGGAGCCAACGANGAAGGCAGGNCCTTAATATCACGNTGGATTTTATACCGGGATGGGTATCACAGTAATATGGGANGAAACAGTTGGNTTGGGACNGAGCTTGAAAGNGGNATAACCCAGGTTTTAACGGGGGGGTCATNGCTTAGAGCAGTTAAAGTCCGGGACGAACTTTTTGGT]
[+] EMBL BX468670 [CAGAATCGGCACGAGGTATCAGCTAACATTGCCACAAAGCCGCCGATCGCCTCCTAATGAAATACGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGAGTAAGCAGGGAAGGGAACAAGAACCAAAACACGACACAACACGCGAATTGCCATCGGGGGAAAGCAGGAAAAATTTGGGTGCCGGTATTACATTATATTGTTTACTTATTGAAATTCCGAACACGTTCCGGTTAGAGTAAAACCAGGCCAGAAGTAACGGGCGGNCAAGTGGTTGGTGTTGCGGTGAGTTGCCAGGTTAGGGAACAAAATTACNGCCAAAGGCTTTANGAAAACCCAAANCCCATTACCCAGGAAAAGGGTTNAACAGGCCNACTATTACGTTTTTAGGAAACAAGGANAAAAAGGGAAAANACGGGCAACACACGGAANACAAGGGGGTTACAGGCAAGCGCAAGGAACGGGCGGNGCGGTTTACATAAAGTTGGTTGGGCAATTACCCAGGGTTGGGCCTGGANTTCCTTTGGAAAGGAACTTCCGGGCCTTAACCGAAAAAACAATTGGCGATACAAAACCGTTAATTAGGGTTTAGCTTGTTNCCAACCCGGGGGCCTTTAAGCAAAATTTAAAGCCCCCGTTGTACCCTTTAAGATCACCCGTTTCCGGACGAAACCGACNCGAAACGAGTCGTTCCCACCCAAGGAGCCAACGANGAAGGCAGGNCCTTAATATCACGNTGGATTTTATACCGGGATGGGTATCACAGTAATATGGGANGAAACAGTTGGNTTGGGACNGAGCTTGAAAGNGGNATAACCCAGGTTTTAACGGGGGGGTCATNGCTTAGAGCAGTTAAAGTCCGGGACGAACTTTTTGGT]
consensusID : consensus_1468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[CCGGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGATAAGAGGAAGGAAAAGAACAAACACACACACACACGCAATGCATCGGGAAGCAGAAATTGGTGCGTATACATATACATTACTATAAATCCGACACGTCGTAGTAAACAGCAGAGTACGGCGCAGTGTGTGTGCGTGTGCAGTAGGACAAATACGCAAGCTTAGAAACCAACCATACCAGAAGGTAAAGCATATACTTTTAGAAAGAAAGAAAGAAAGAAAGGTAGAGAGAGGGGGTATAATGTGATCAGTGCTGATCTGAGATCGGCTACGAAAATGCAACAACTATAGTTACTTCACCGGCTAGCATACCTACTAACCTCGCACCCACGCTCCCAGGCAGAGAGCTATCGTGTTTCGTGTTCTTGGAGTGTGGGGTGAGGTACGTTAGGTTGTTATAACGAATTGGAGGCAGCAAACGACTAATAGAAGCGAACATTAGAAAGACACAAACAAACAAACAGACAAACAAACAAACAAGTTAATCACTAAGAGCGG]
[+] EMBL BM609961 [CCGGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGATAAGAGGAAGGAAAAGAACAAACACACACACACACGCAATGCATCGGGAAGCAGAAATTGGTGCGTATACATATACATTACTATAAATCCGACACGTCGTAGTAAACAGCAGAGTACGGCGCAGTGTGTGTGCGTGTGCAGTAGGACAAATACGCAAGCTTAGAAACCAACCATACCAGAAGGTAAAGCATATACTTTTAGAAAGAAAGAAAGAAAGAAAGGTAGAGAGAGGGGGTATAATGTGATCAGTGCTGATCTGAGATCGGCTACGAAAATGCAACAACTATAGTTACTTCACCGGCTAGCATACCTACTAACCTCGCACCCACGCTCCCAGGCAGAGAGCTATCGTGTTTCGTGTTCTTGGAGTGTGGGGTGAGGTACGTTAGGTTGTTATAACGAATTGGAGGCAGCAAACGACTAATAGAAGCGAACATTAGAAAGACACAAACAAACAAACAGACAAACAAACAAACAAGTTAATCACTAAGAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1468#0 CAGAATCGGCACGAGGTATCAGCTAACATTGCCACAAAGCCGCCGATCGCCTCCTAATGA 60
consensus_1468#1 ------------------------------------------------------------
consensus_1468#0 AATACGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACA 120
consensus_1468#1 --CCGGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACA 58
*******************************************************
consensus_1468#0 ATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCT 180
consensus_1468#1 ATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCT 118
************************************************************
consensus_1468#0 TCGAGTAAGCAGGGAAGGGAACAAGAACCAAAACACGACACAACACGCGAATTGCCATCG 240
consensus_1468#1 TCGA-TAAG--AGGAAGGAA--AAGAAC--AAACAC-ACACA-CACACGCAATGC-ATCG 168
**** **** ****** * ****** ****** ***** *** ** * *** ****
consensus_1468#0 GGGGAAAGCAGGAAAAATTTGGGTGCCGGTATTACATTATATTGTTTACTTATTGAAATT 300
consensus_1468#1 GG---AAGCAGAAA-----TTGGTGC--GTAT-ACAT-ATACA------TTACTATAAAT 210
** ****** ** * ***** **** **** *** *** * ** *
consensus_1468#0 CCGAACACGTTCCGGTTAGAGTAAAACCAGGCCAGAAGTAACGGGCGGNCAAGTGGTTGG 360
consensus_1468#1 CCGA-CACGTCGTAGTAA----ACAGCAGAGTACGGCGCAGTGTGTGTGCGTGTG----- 260
**** ***** ** * * * * * * * * * * * * ***
consensus_1468#0 TGTTGCGGTGAGTTGCCAGGTTAGGGAACAAAATTACNGCCAAAGGCTTTANGAAAACCC 420
consensus_1468#1 CAGTAGGACAAATACGCAAGCTTAGAAACCAA-CCATACCAGAAGGTAAAGCATATACTT 319
* * * * ** * * * *** ** * * **** * **
consensus_1468#0 AAANCCCATTACCCAGGAAAAGGGTTNAACAGGCCNACTATTACGTTTTTAGGAAACAAG 480
consensus_1468#1 TTAGAAAGAAAGAAAGAAAGAAAGGTAGAGAGAGGGGGTATAATGTGATCAGTGC-TGAT 378
* * ** ** * * * * ** *** * ** * ** *
consensus_1468#0 GANAAAAAGGGAAAANACGGGCAACACACGGAANACAAGGGGGTTACAGGCAAGCGCAAG 540
consensus_1468#1 CTGAGATCGGCTACGAAAATGCAACA-----ACTATAGTTACTTCACCGGCTAGCATAC- 432
* * ** * * ****** * * * * ** *** *** *
consensus_1468#0 GAACGGGCGGNGCGGTTTACATAAAGTTGGTTGGGCAATTACCCAGGGTTGGGCCTGGAN 600
consensus_1468#1 ---CTACTAACCTCGCACCCACGCTCCCAGGCAGAGAGCTATCGTGTTTCGTGTTCTTGG 489
* * ** * * * ** * * * * *
consensus_1468#0 TTCCTTTGGAAAGGAACTTCCGGGCCTTAACCGAAAAAACAATTGGCGATACAAAACCGT 660
consensus_1468#1 AGTGTGGGGTGAGGTACGTTAGGTTGTTAT------AACGAATTGGAGGCAGCAAACGAC 543
* ** *** ** * ** *** ** ****** * * ****
consensus_1468#0 TAATTAGGGTTTAGCTTGTTNCCAACCCGGGGGCCTTTAAGCAAAATTTAAAGCCCCCGT 720
consensus_1468#1 TAATAGAAGC---GAACATTAGAAAGACACAAACAAACAAACAGACAAACAAACAAACAA 600
**** * * ** ** * * ** ** * ** * *
consensus_1468#0 TGTACCCTTTAAGATCACCCGTTTCCGGACGAAACCGACNCGAAACGAGTCGTTCCCACC 780
consensus_1468#1 GTTAATCACTAAGAGCGG------------------------------------------ 618
** * ***** *
consensus_1468#0 CAAGGAGCCAACGANGAAGGCAGGNCCTTAATATCACGNTGGATTTTATACCGGGATGGG 840
consensus_1468#1 ------------------------------------------------------------
consensus_1468#0 TATCACAGTAATATGGGANGAAACAGTTGGNTTGGGACNGAGCTTGAAAGNGGNATAACC 900
consensus_1468#1 ------------------------------------------------------------
consensus_1468#0 CAGGTTTTAACGGGGGGGTCATNGCTTAGAGCAGTTAAAGTCCGGGACGAACTTTTTGGT 960
consensus_1468#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||