cluster # 1469

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Anopheles gambiae
cluster # 1469 cluster # 1469 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1469#0 length = 746 sequences # 1

consensus_1469#1 length = 678 sequences # 1

consensusID : consensus_1469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 746
fasta sequence

                              [CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCATATGTAGGCATATTTACAAATGCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGTGTCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGCCGCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCAATTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGACACACATACAGAGATCCACAAAATGAACTGCCTCTANAACAGTAAGCTGANGACGCGCATTATCAACATGTAATATCACTTGCATAGCTNCACACGGTCTACCCCCTATGGATGGACATNCTACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGTTTGGCCAACGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCGGGGAAACAACCCCAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAACGGCACGCAAAAACAACCGGACTACATTTTCCCGGAACN]

[+] EMBL AL692328             [CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCATATGTAGGCATATTTACAAATGCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGTGTCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGCCGCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCAATTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGACACACATACAGAGATCCACAAAATGAACTGCCTCTANAACAGTAAGCTGANGACGCGCATTATCAACATGTAATATCACTTGCATAGCTNCACACGGTCTACCCCCTATGGATGGACATNCTACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGTTTGGCCAACGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCGGGGAAACAACCCCAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAACGGCACGCAAAAACAACCGGACTACATTTTCCCGGAACN]




>consensus_1469#0
CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGA
TTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTT
GTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCATATGTAGGCATATTTACAAAT
GCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGTG
TCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGCC
GCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCAA
TTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGAC
ACACATACAGAGATCCACAAAATGAACTGCCTCTANAACAGTAAGCTGANGACGCGCATT
ATCAACATGTAATATCACTTGCATAGCTNCACACGGTCTACCCCCTATGGATGGACATNC
TACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGTTTGGCCAA
CGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCGGGGAAACAACCC
CAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAACGGCACGCAAAAA
CAACCGGACTACATTTTCCCGGAACN

consensusID : consensus_1469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CCGCGCATGACGCTCTAAACCGGAATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGAATAGTGTTAATCCTTGCCTAAATTGCTAACATTACAATTTCCTATCTGCTGCACCAGGTGCGCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGACATTGTGTGGCATGCGTGCGAGCGGAGTCGTTTGCTCTATTCTATGCTTGAAAATGGACTATTTTTCTTATGTTACAAATAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAATGATTTCTTTTTTAATTTAAAACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGCTTTTCGAGTCGGTTTAAATGTATAATATGGAATTTATCCGATGAAAGCATAAAACCCGAATAAGTGGCAGGATTACAAATTGAAGGGGATCCTCTGTCGCATGAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATATTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGCTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAGTATGTAGGATATTTACAAATGAAATTAAATCCGTAATAGATGAAACTAACGCATTTTGTGAACGTGTGAGTGTGTGTTGTTTATTACTCGG]

[+] EMBL BM631648             [CCGCGCATGACGCTCTAAACCGGAATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGAATAGTGTTAATCCTTGCCTAAATTGCTAACATTACAATTTCCTATCTGCTGCACCAGGTGCGCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGACATTGTGTGGCATGCGTGCGAGCGGAGTCGTTTGCTCTATTCTATGCTTGAAAATGGACTATTTTTCTTATGTTACAAATAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAATGATTTCTTTTTTAATTTAAAACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGCTTTTCGAGTCGGTTTAAATGTATAATATGGAATTTATCCGATGAAAGCATAAAACCCGAATAAGTGGCAGGATTACAAATTGAAGGGGATCCTCTGTCGCATGAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATATTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGCTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAGTATGTAGGATATTTACAAATGAAATTAAATCCGTAATAGATGAAACTAACGCATTTTGTGAACGTGTGAGTGTGTGTTGTTTATTACTCGG]




>consensus_1469#1
CCGCGCATGACGCTCTAAACCGGAATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGAA
TAGTGTTAATCCTTGCCTAAATTGCTAACATTACAATTTCCTATCTGCTGCACCAGGTGC
GCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGACATTGTGTGGCATGCGTGC
GAGCGGAGTCGTTTGCTCTATTCTATGCTTGAAAATGGACTATTTTTCTTATGTTACAAA
TAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAATGATTTCTTTTTTAATTTAAA
ACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGCTTTTCGAGTCGGTTTAAATG
TATAATATGGAATTTATCCGATGAAAGCATAAAACCCGAATAAGTGGCAGGATTACAAAT
TGAAGGGGATCCTCTGTCGCATGAAGTGTAGATACACACAAGGGCCGCAACATTTACACG
CAAAACGATTACGTTTGATATTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGCTT
GGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAGTATGTAGGATATT
TACAAATGAAATTAAATCCGTAATAGATGAAACTAACGCATTTTGTGAACGTGTGAGTGT
GTGTTGTTTATTACTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1469#0      CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGA 60
consensus_1469#1      CCGCGCATGACGCTCTAAACCGGA-ATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGA 59
                      * *  *     * *  *     ** *     * *   **  *** **    * *  * **

consensus_1469#0      TTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTT 120
consensus_1469#1      ATAGTGTTAAT---CCTTGCCT-----AAATTGCTAACATTACA--ATTTCCTATCTGCT 109
                       **   ** **   **** **      **      **** ****      * *   ** *

consensus_1469#0      GTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAT-ATGTAGGCATATTTACAAA 179
consensus_1469#1      GCACCAGGT-------GCGCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGAC 162
                      * *  *  *       * *****    **  * * *  *   * *   * ******  * 

consensus_1469#0      TGCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGT 239
consensus_1469#1      ATTGTGTGGCATGCGTGCGAGCGGAGTCGTTTGCTCTATTCTATG--CTTGAAAATGGAC 220
                            *   *  ***   **  *   *  *  * *  **   **  * **  * **   

consensus_1469#0      GTCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGC 299
consensus_1469#1      TATTTTTCTTATGTTACAAATAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAAT 280
                          *    ***  *        ****    ***   *    *****  *    **    

consensus_1469#0      CGCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCA 359
consensus_1469#1      GATTTCTTTTTTAATTTAAAACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGC 340
                           *       * *         ** * **        **  *  *  *      *  

consensus_1469#0      ATTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGA 419
consensus_1469#1      TTTTCGAGTCGGTTTAAATGTAT-AATATGGAATTTATCCGATGAAAGCATAAAACCCGA 399
                       ** **  ***    * ****** * *   *  *** *  *****     *  **   **

consensus_1469#0      CACACATACAGAGATCCACAAAATGAACTG---CCTCTANAACAGTAAGCTGANGACGCG 476
consensus_1469#1      -ATAAGTGGCAGGATT-ACAAATTGAAGGGGATCCTCTGTCGCA-TGAAGTGTAGATACA 456
                       * *  *     ***  ***** ****  *   *****    ** * *  **  **  * 

consensus_1469#0      CATTATCAACATGTAATATCACTTGCATAGC---TNCACACGGTCTACCCCCTATGGATG 533
consensus_1469#1      CACAAGGGCCGCAACAT-TTACACGCAAAACGATTACGTTTGATATTCCTTCCCCGGGGA 515
                      **  *    *     ** * **  *** * *   * *    * * * **  *   **   

consensus_1469#0      GA-CATNCTACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGT 592
consensus_1469#1      AAGCAAAAAACAATACACAGCGCTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTA 575
                       * **    ******    *  * *        ** *** **  ** *   * * *    

consensus_1469#0      TTGGCC----AACGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCG 648
consensus_1469#1      TGAACCCTTCAGTATGTAGGATATTTACAAATGAAATTAAATCCGTAATAGATGAAACTA 635
                      *   **    *    ******* *    *            *   *  * *  ** *   

consensus_1469#0      GGGAAACAACCCCAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAAC 708
consensus_1469#1      ---ACGCATTTTGTGAACGTGTGAGTGTGTGTTGTTTATTACTCGG-------------- 678
                         *  **       *** *   *   ** *            * *              

consensus_1469#0      GGCACGCAAAAACAACCGGACTACATTTTCCCGGAACN 746
consensus_1469#1      --------------------------------------