cluster # 1483

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Anopheles gambiae
cluster # 1483 cluster # 1483 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1483#0 length = 632 sequences # 1

consensus_1483#1 length = 566 sequences # 1

consensusID : consensus_1483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [ATCCCCCGAGGTTATTTTCTAACCAAAAACAAAACACTTCCATTAAACTTTGTTTTTCAAGCTGTGTGCGTGGCGTATGCTATACAGTACGTTTTGAAAATTTTATTCAACTCTATATGAGAGTTGCATACTACATAGCTTAACATCGCCCCAATCTGGAGTAGATTATAACCTGGGTCAAGCCGCAGAACCCAGCATTTTACTGTTCAACAACGGTTCGCTACCGGATTTCCAGAATCAACACTTAACGGCAGTGCAGAAAATTCCTCTCAAGTCAAGCTTGTTTTCATCCTGTATACTTAATGATTGACGAGATGTATATTAAACGACGTCTAAAGTAAAACTTTTTGAAAGCGTGCTTTACACGTTTCATGCTATAATCATTCAAACAATATAACCCCAGCAGAACATTTTTACCCGTTGTGTATACACCACTTTGCTGACATACCGCGAAACTCACCTGACTGCGACGAACGAAAGCTCTTGTCGAGTTGTTTGAACATTATCATAGATGAAAACGGTANACTCGTGCGCTTGCACAAGCCGAGCGGCTTCTTCAACATATGACGACGTGCCATATCATTTTGGAACACAAGGCCAANAGCATCGTCAAGGGTACTTCGTGTGAACTT]

[+] EMBL AL692388             [ATCCCCCGAGGTTATTTTCTAACCAAAAACAAAACACTTCCATTAAACTTTGTTTTTCAAGCTGTGTGCGTGGCGTATGCTATACAGTACGTTTTGAAAATTTTATTCAACTCTATATGAGAGTTGCATACTACATAGCTTAACATCGCCCCAATCTGGAGTAGATTATAACCTGGGTCAAGCCGCAGAACCCAGCATTTTACTGTTCAACAACGGTTCGCTACCGGATTTCCAGAATCAACACTTAACGGCAGTGCAGAAAATTCCTCTCAAGTCAAGCTTGTTTTCATCCTGTATACTTAATGATTGACGAGATGTATATTAAACGACGTCTAAAGTAAAACTTTTTGAAAGCGTGCTTTACACGTTTCATGCTATAATCATTCAAACAATATAACCCCAGCAGAACATTTTTACCCGTTGTGTATACACCACTTTGCTGACATACCGCGAAACTCACCTGACTGCGACGAACGAAAGCTCTTGTCGAGTTGTTTGAACATTATCATAGATGAAAACGGTANACTCGTGCGCTTGCACAAGCCGAGCGGCTTCTTCAACATATGACGACGTGCCATATCATTTTGGAACACAAGGCCAANAGCATCGTCAAGGGTACTTCGTGTGAACTT]




>consensus_1483#0
ATCCCCCGAGGTTATTTTCTAACCAAAAACAAAACACTTCCATTAAACTTTGTTTTTCAA
GCTGTGTGCGTGGCGTATGCTATACAGTACGTTTTGAAAATTTTATTCAACTCTATATGA
GAGTTGCATACTACATAGCTTAACATCGCCCCAATCTGGAGTAGATTATAACCTGGGTCA
AGCCGCAGAACCCAGCATTTTACTGTTCAACAACGGTTCGCTACCGGATTTCCAGAATCA
ACACTTAACGGCAGTGCAGAAAATTCCTCTCAAGTCAAGCTTGTTTTCATCCTGTATACT
TAATGATTGACGAGATGTATATTAAACGACGTCTAAAGTAAAACTTTTTGAAAGCGTGCT
TTACACGTTTCATGCTATAATCATTCAAACAATATAACCCCAGCAGAACATTTTTACCCG
TTGTGTATACACCACTTTGCTGACATACCGCGAAACTCACCTGACTGCGACGAACGAAAG
CTCTTGTCGAGTTGTTTGAACATTATCATAGATGAAAACGGTANACTCGTGCGCTTGCAC
AAGCCGAGCGGCTTCTTCAACATATGACGACGTGCCATATCATTTTGGAACACAAGGCCA
ANAGCATCGTCAAGGGTACTTCGTGTGAACTT

consensusID : consensus_1483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [TGCGACGAACGAAAGCTCTTTGTCGAGTTGTTTTTGAACATTATCATAGATGAAAACGGTAGACTCGTGCGCTTGCACAAGCCGAGCGGCTTCTTCAAATATGAGACGTGCCATATCATTTTGAACACAAGCCAAAAGCATCGTAAGGGTAGTTGTGTGAACTTAAACGATTGCACAAATTGTGTAAAAGGCACTGTAAAAATCTTCTAGTTTTATAGTAATATAAACGTTATCTGTATGTGTGCATGTACAATTGCATGCATACAAAGCACCGATTGCGCAAAGGAGAAAAATCTTAATTCTATCCCATTACATTTGCTGCATGGATTCATTTCAACCAAAATTATGAAATTTCGAAAAAGCTTGAAATTATCATATCTAAAAAAAATCAGACCTAAAACAAAAAAGACAAAAGATCTGGGGTAAGCACCATGTAAACATAGAAGATGATTAAAGATGAAACTATTATTTATTTCATCATTATCGGATGAACAAAACCCTAGTAATAGAATCATTCACGGACGAGCTATGTAAAACCACAAACGTTATGTGTCCCAAACAGTACA]

[+] EMBL BX613229             [TGCGACGAACGAAAGCTCTTTGTCGAGTTGTTTTTGAACATTATCATAGATGAAAACGGTAGACTCGTGCGCTTGCACAAGCCGAGCGGCTTCTTCAAATATGAGACGTGCCATATCATTTTGAACACAAGCCAAAAGCATCGTAAGGGTAGTTGTGTGAACTTAAACGATTGCACAAATTGTGTAAAAGGCACTGTAAAAATCTTCTAGTTTTATAGTAATATAAACGTTATCTGTATGTGTGCATGTACAATTGCATGCATACAAAGCACCGATTGCGCAAAGGAGAAAAATCTTAATTCTATCCCATTACATTTGCTGCATGGATTCATTTCAACCAAAATTATGAAATTTCGAAAAAGCTTGAAATTATCATATCTAAAAAAAATCAGACCTAAAACAAAAAAGACAAAAGATCTGGGGTAAGCACCATGTAAACATAGAAGATGATTAAAGATGAAACTATTATTTATTTCATCATTATCGGATGAACAAAACCCTAGTAATAGAATCATTCACGGACGAGCTATGTAAAACCACAAACGTTATGTGTCCCAAACAGTACA]




>consensus_1483#1
TGCGACGAACGAAAGCTCTTTGTCGAGTTGTTTTTGAACATTATCATAGATGAAAACGGT
AGACTCGTGCGCTTGCACAAGCCGAGCGGCTTCTTCAAATATGAGACGTGCCATATCATT
TTGAACACAAGCCAAAAGCATCGTAAGGGTAGTTGTGTGAACTTAAACGATTGCACAAAT
TGTGTAAAAGGCACTGTAAAAATCTTCTAGTTTTATAGTAATATAAACGTTATCTGTATG
TGTGCATGTACAATTGCATGCATACAAAGCACCGATTGCGCAAAGGAGAAAAATCTTAAT
TCTATCCCATTACATTTGCTGCATGGATTCATTTCAACCAAAATTATGAAATTTCGAAAA
AGCTTGAAATTATCATATCTAAAAAAAATCAGACCTAAAACAAAAAAGACAAAAGATCTG
GGGTAAGCACCATGTAAACATAGAAGATGATTAAAGATGAAACTATTATTTATTTCATCA
TTATCGGATGAACAAAACCCTAGTAATAGAATCATTCACGGACGAGCTATGTAAAACCAC
AAACGTTATGTGTCCCAAACAGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1483#0      ATCCCCCGAGGTTATTTTCTAACCAAAAACAAAACACTTCCATTAAACTTTGTTTTTCAA 60
consensus_1483#1      --------------------TGCGACGAACGAAAGCTCTTTGTCGAG--TTGTTTTTGAA 38
                                            * *  *** ***    *   *  *   ******** **

consensus_1483#0      -GCTGTGTGCGTGGCGTATGCTATACA-GTACGTTTTGAAAATTTTATTCAACTCTATAT 118
consensus_1483#1      CATTATCATAGATGAAAACGGTAGACTCGTGCGCTTGCACAAGCCGAGCGGCTTCTTCAA 98
                         * *    *  *   * * ** **  ** ** **  * **    *      ***  * 

consensus_1483#0      GAGAGTTGCATACTACATAGCTT--AACATCGCCCCAATCTGGAGTAGATTATAACCTGG 176
consensus_1483#1      ATATGAGACGTGCCATATCATTTTGAACACAAGCCAAAAGCATCGTAAG--GGTAGTTGT 156
                          *   * * * * **   **  ****    ** **      ***       *  ** 

consensus_1483#0      GTCAAGCCGCAGAACCCAGCATTTTACTGTTCAACAACGGTTCGCTACCGGATTTCCAGA 236
consensus_1483#1      GTGAACTTAAACGATTGCACAA---ATTGTGTA--AAAGGCACTGTAAAAATCTTCTAG- 210
                      ** **     *  *     **    * ***  *  ** **  *  **      *** ** 

consensus_1483#0      ATCAACACTTAACGGCAGTGCAGAAAATTCCTCTCAAGTCAAGCTTGTTTTCATCCTGTA 296
consensus_1483#1      -------TTTTATAGTAATATAAACGTTATCT----------GTATGTGTGCA---TGTA 250
                              ** *  * * *  * *   *  **          *  *** * **   ****

consensus_1483#0      TACTTAATGATTGACGAGATGTATATTAAACGACGTCTAAAGTAAAACTTTTTGAAAGCG 356
consensus_1483#1      CAATTGCATGCATACAAAGCACCGATTGCGCAAAG---GAGAAAAATCTTAATTCTATCC 307
                       * **        ** *       ***   * * *    *   *** ***  *   * * 

consensus_1483#0      TGCTTTACACGTTTCATGCTATAAT--CATTCAAACAATATAACCCCAGCAGAACATTTT 414
consensus_1483#1      CATTACATTTGCTGCATGGATTCATTTCAACCAAA-ATTATGAAATTTCGAAAAAGCTTG 366
                         *  *   * * ****   * **  **  **** * *** *       * **   ** 

consensus_1483#0      TACCCGTTGTGTATACACCACTTTGCTGACATACCGCGAAACTCACCTGACTGCGACGAA 474
consensus_1483#1      AAATTATCATATCTAAAAAAAATCA--GACCTAAAACAAAAAAGACAAAA--GATCTGGG 422
                       *    *  * * ** *  *  *    *** **   * ***   **   *  *    *  

consensus_1483#0      CGAAAGCTCTTGTCGAGTTGTTTGAACATTATCATAGATGAAAACGGTANACTCGTGCGC 534
consensus_1483#1      GTAAGCACCATGTAAACATA---GAAGATGATTAAAGATGAAACTATTAT-TTATTTCAT 478
                        **    * ***  *  *    *** ** ** * ********    **   *  * *  

consensus_1483#0      TTGCACAAGCCGAGCGGCTTCTTCAACATATGACGACGTGC---CATATCATTTTGGAAC 591
consensus_1483#1      CATTATCGGATGAACAAAACCCTAGTAATAGAATCATTCACGGACGAGCTATGTAAAACC 538
                          *   *  ** *     * *    ***  *  *    *   *     ** *   * *

consensus_1483#0      ACAAGGCCAANAGCATCGTCAAGGGTACTTCGTGTGAACTT 632
consensus_1483#1      ACAAACGTTAT-GTGTCCCAAACAGTACA------------ 566
                      ****     *  *  **   **  ****