cluster # 1497

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Anopheles gambiae
cluster # 1497 cluster # 1497 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1497#0 length = 627 sequences # 1

consensus_1497#1 length = 588 sequences # 1

consensusID : consensus_1497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [GCCAGAATCGCCACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCAGCACGGTGGCCGGTTCGACGTCAACCGGCGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAACAACAACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAGCAGCAGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGATCAAAAGCTTGGTCGCTGATCAACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGGGAGGTGCCGGTACAGGAGCCGGGCCAACCGGAGTACCNGTAACCTGCTAGACGGACACAACCGAACCAAATAGCCGGAGGAACCAAGTACGAC]

[+] EMBL BX467262             [GCCAGAATCGCCACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCAGCACGGTGGCCGGTTCGACGTCAACCGGCGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAACAACAACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAGCAGCAGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGATCAAAAGCTTGGTCGCTGATCAACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGGGAGGTGCCGGTACAGGAGCCGGGCCAACCGGAGTACCNGTAACCTGCTAGACGGACACAACCGAACCAAATAGCCGGAGGAACCAAGTACGAC]




>consensus_1497#0
GCCAGAATCGCCACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGACT
ACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCG
GGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACC
GACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCG
AGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCAGCACGGTGGCCG
GTTCGACGTCAACCGGCGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAACAACA
ACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAGCAGC
AGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGATCAA
AAGCTTGGTCGCTGATCAACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGGGAGGTG
CCGGTACAGGAGCCGGGCCAACCGGAGTACCNGTAACCTGCTAGACGGACACAACCGAAC
CAAATAGCCGGAGGAACCAAGTACGAC

consensusID : consensus_1497#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCCGGCGACCCCAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAACGAGACGGCGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGAGGAGCGCTTCCGCCTGAACCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAAGGGCGGCGGGCTGGGTGCGGGCGAGGATGCGGCCGGCGGGAATGGGGCGGGCGGTGGTGGTGCCGGCGGGATCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGTGGCGAAAAAGCACGACGAGTTCATGCCGGACCAGATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCA]

[+] EMBL BM648867             [CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCCGGCGACCCCAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAACGAGACGGCGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGAGGAGCGCTTCCGCCTGAACCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAAGGGCGGCGGGCTGGGTGCGGGCGAGGATGCGGCCGGCGGGAATGGGGCGGGCGGTGGTGGTGCCGGCGGGATCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGTGGCGAAAAAGCACGACGAGTTCATGCCGGACCAGATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCA]




>consensus_1497#1
CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCCGGCGACC
CCAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAACGAGACGG
CGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGAGGAGCGCT
TCCGCCTGAACCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAAGGGCGGCGGGC
TGGGTGCGGGCGAGGATGCGGCCGGCGGGAATGGGGCGGGCGGTGGTGGTGCCGGCGGGA
TCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGTGGCGAAAAAGCACG
ACGAGTTCATGCCGGACCAGATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGG
GGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTC
ATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGC
TGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1497#0      GCCAGAATCGCC-ACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGAC 59
consensus_1497#1      -------CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCC 53
                              ***  *** *       * *  * ** **    ** *  **    ****  *

consensus_1497#0      TACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCAC-CTG 118
consensus_1497#1      GGCGACCC-CAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAA 112
                        ***    *     *     **  * **  * *  *  ** *    * *  *    *  

consensus_1497#0      CGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGA 178
consensus_1497#1      CGAGACGGCGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGA 172
                      ** *   *     ****    *    *      *   **  *** ** **  **   ***

consensus_1497#0      CCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTC 238
consensus_1497#1      GGAGCGCTTCCGCCTGAA---CCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAA 229
                          ***        * *     * ****  ***  **   ** * *    **  ***  

consensus_1497#0      CGAGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCA-GCACGGTGG 297
consensus_1497#1      -GGGCGGCGGGCTGGGTGCGGGCGAGGATG--CGGCCGGCGGGAATGGGGCGGGCGGTGG 286
                       * *  *    *   ** *   *     *   ** **  *   * *     *  ******

consensus_1497#0      CCGGTTCGACGTCAACCGG-CGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAAC 356
consensus_1497#1      TGGTGCCGGCGGGATCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGT 346
                        *   ** **  * * ** ***  *  * *          ** *  **   *       

consensus_1497#0      AACAACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAG 416
consensus_1497#1      GGCGA-AAAAGCACGACGAGTTCATGCCGGACCAGATCGCGGACTACG-AGGAGCGGGAA 404
                        * * ** ****  ** *   * **** * ****     * *** ** ** * * * * 

consensus_1497#0      CAGCAGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGA 476
consensus_1497#1      CGG--ATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGA 462
                      * *     ** **  *  ***  * *    * * ** *  ** **** *     * ****

consensus_1497#0      TCAAAAGCTTGGTCGCTGATC--AACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGG 534
consensus_1497#1      GCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCG-ACGCAAGTAT 521
                       ** *  * *   *  * ***  ****  * *    *    * **** *   *       

consensus_1497#0      GAGGTGCCGGTACAGGAGCCGGGCCAACCG-GAGTACCNGTAACCTGCTAGACGGACACA 593
consensus_1497#1      AAGGAAACG-TACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCC 580
                       ***   ** ***  **  * *  ** *   *** * * *  **   *      * * * 

consensus_1497#0      ACCGAACCAAATAGCCGGAGGAACCAAGTACGAC 627
consensus_1497#1      ACAGT-CCA------------------------- 588
                      ** *  ***