cluster # 1507

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1507 cluster # 1507 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1507#0 length = 695 sequences # 1

consensus_1507#1 length = 396 sequences # 1

consensusID : consensus_1507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [CCGCCCACGCGTCCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCGTTCGTTCGTTCAATTAAAAAGAAACAACACAGATGATGAGTGTTGCAACAGTCTTTGAACGGTTGAAATAGAATAGTGTTCAATGTATTCGTATGTTGCTGAATTGTGACTGAGTGACCAACTTCAACTTAAGAATCAAGCGATGATATACGAACTAAACATGCCTACAGCAATGACGTTTGAAAGATATTCCAGAACAATGCAAGAACGAATCGAAGATGATATCCTTTCTGAAAATTCTCATCTAGATGACCTCTACACAAGATATCGGCAACGACTGCGAAGATCGTTGTTCATCACTGGCCTGGGAATATCGATACTCTCTTGCATCACGTCAATCGTCCTATGTGCGCTTCATGATGCGATTCTGGCCGATGTAGCGCTGCTGGCTGGTGCCTCCACAGTGCTATGTGGAATCCTGGTGGCTTTACAATTCCCGACAGTGATGAACTCGCCCCTGGCTGCTCTTTCCTTCGCAATTCTGACCACTGGAACGATTGGTGCCATATCCACGTTCGTCGGTACACAGCTCGCGCCTTTGCCACTGTTTGCATTGATACTTGGTGTCCACACGATGCTACCAATATCTTGGCCGGTATCAGTGGTGCTGGCTGTGTTGCTCTGCATCGTCCACATTGGA]

[+] EMBL BM609311             [CCGCCCACGCGTCCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCGTTCGTTCGTTCAATTAAAAAGAAACAACACAGATGATGAGTGTTGCAACAGTCTTTGAACGGTTGAAATAGAATAGTGTTCAATGTATTCGTATGTTGCTGAATTGTGACTGAGTGACCAACTTCAACTTAAGAATCAAGCGATGATATACGAACTAAACATGCCTACAGCAATGACGTTTGAAAGATATTCCAGAACAATGCAAGAACGAATCGAAGATGATATCCTTTCTGAAAATTCTCATCTAGATGACCTCTACACAAGATATCGGCAACGACTGCGAAGATCGTTGTTCATCACTGGCCTGGGAATATCGATACTCTCTTGCATCACGTCAATCGTCCTATGTGCGCTTCATGATGCGATTCTGGCCGATGTAGCGCTGCTGGCTGGTGCCTCCACAGTGCTATGTGGAATCCTGGTGGCTTTACAATTCCCGACAGTGATGAACTCGCCCCTGGCTGCTCTTTCCTTCGCAATTCTGACCACTGGAACGATTGGTGCCATATCCACGTTCGTCGGTACACAGCTCGCGCCTTTGCCACTGTTTGCATTGATACTTGGTGTCCACACGATGCTACCAATATCTTGGCCGGTATCAGTGGTGCTGGCTGTGTTGCTCTGCATCGTCCACATTGGA]




>consensus_1507#0
CCGCCCACGCGTCCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCGTTCGT
TCGTTCAATTAAAAAGAAACAACACAGATGATGAGTGTTGCAACAGTCTTTGAACGGTTG
AAATAGAATAGTGTTCAATGTATTCGTATGTTGCTGAATTGTGACTGAGTGACCAACTTC
AACTTAAGAATCAAGCGATGATATACGAACTAAACATGCCTACAGCAATGACGTTTGAAA
GATATTCCAGAACAATGCAAGAACGAATCGAAGATGATATCCTTTCTGAAAATTCTCATC
TAGATGACCTCTACACAAGATATCGGCAACGACTGCGAAGATCGTTGTTCATCACTGGCC
TGGGAATATCGATACTCTCTTGCATCACGTCAATCGTCCTATGTGCGCTTCATGATGCGA
TTCTGGCCGATGTAGCGCTGCTGGCTGGTGCCTCCACAGTGCTATGTGGAATCCTGGTGG
CTTTACAATTCCCGACAGTGATGAACTCGCCCCTGGCTGCTCTTTCCTTCGCAATTCTGA
CCACTGGAACGATTGGTGCCATATCCACGTTCGTCGGTACACAGCTCGCGCCTTTGCCAC
TGTTTGCATTGATACTTGGTGTCCACACGATGCTACCAATATCTTGGCCGGTATCAGTGG
TGCTGGCTGTGTTGCTCTGCATCGTCCACATTGGA

consensusID : consensus_1507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [CCGGGACGACAGTTGCTTCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCGTTCGTTCGTTCAATTAAAAAGAAACAACAGTAAGATTAAAGTTATCCTTCGAAGAAACCTAACACTGGTGATCACGTGTGCATTAGATTGTCCTAACTGAACCTTGTGCTCGTTCGTTCCGTGAGGAAGTCGATGACTCGTAACTATAGTGAAGTTAATTCTGCAAGTGATAGGATAGGCCGGATAAAAACTAATAAACATGACGCCAGGCGTCATCACAACACGCCTCCATATTTAATCATTCACGGGCACTTGCTAACGAAAGGATAGAATGCGACGTCGTGCGCAACTCGTGAAAATAGCAGCATCGTGCGTCGTCGGCTGTATGGTTCAAAC]

[+] EMBL BM642566             [CCGGGACGACAGTTGCTTCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCGTTCGTTCGTTCAATTAAAAAGAAACAACAGTAAGATTAAAGTTATCCTTCGAAGAAACCTAACACTGGTGATCACGTGTGCATTAGATTGTCCTAACTGAACCTTGTGCTCGTTCGTTCCGTGAGGAAGTCGATGACTCGTAACTATAGTGAAGTTAATTCTGCAAGTGATAGGATAGGCCGGATAAAAACTAATAAACATGACGCCAGGCGTCATCACAACACGCCTCCATATTTAATCATTCACGGGCACTTGCTAACGAAAGGATAGAATGCGACGTCGTGCGCAACTCGTGAAAATAGCAGCATCGTGCGTCGTCGGCTGTATGGTTCAAAC]




>consensus_1507#1
CCGGGACGACAGTTGCTTCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCG
TTCGTTCGTTCAATTAAAAAGAAACAACAGTAAGATTAAAGTTATCCTTCGAAGAAACCT
AACACTGGTGATCACGTGTGCATTAGATTGTCCTAACTGAACCTTGTGCTCGTTCGTTCC
GTGAGGAAGTCGATGACTCGTAACTATAGTGAAGTTAATTCTGCAAGTGATAGGATAGGC
CGGATAAAAACTAATAAACATGACGCCAGGCGTCATCACAACACGCCTCCATATTTAATC
ATTCACGGGCACTTGCTAACGAAAGGATAGAATGCGACGTCGTGCGCAACTCGTGAAAAT
AGCAGCATCGTGCGTCGTCGGCTGTATGGTTCAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1507#0      -----CCGCCCACGCGTCCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCG 55
consensus_1507#1      CCGGGACGACAGTTGCTTCGCGACCAGCTCGGAAACCTGGCACTGAGTTTGCTGTGCGCG 60
                            ** *      * ******************************************

consensus_1507#0      TTCGTTCGTTCAATTAAAAAGAAACAACACAGATGATGAGTGTTGCAACAGTCTTTGAAC 115
consensus_1507#1      TTCGTTCGTTCAATTAAAAAGAAACAACA-GTAAGATTAAAGTTAT-----CCTTCGAAG 114
                      *****************************   * *** *  ***        *** *** 

consensus_1507#0      GGTTGAAATAGAATAGTGTTCAATGTATTCGT-ATGTTGCTGAATTGTGACTGAGTGACC 174
consensus_1507#1      AAACCTAACAC--TGGTGATCA-CGTGTGCATTAGATTGTCCTAACTGAACCTTGTGCTC 171
                            ** *   * *** ***  ** * * * *  ***    *     **   ***  *

consensus_1507#0      AACTTCAACTTAAGAATCAAGCGATGATATACGAACTAAACATGCCTACAGCAATGACGT 234
consensus_1507#1      G--TTCGTTCCGTGAGGAAGTCGATGACTCGT-AACTATA-GTGAAGTTAATTCTGCAAG 227
                         ***       **   *  ******      ***** *  **     *    **    

consensus_1507#0      TTGAAAGATATTCCAGAACAATGCAAGAACGAATCGAAGATGATATCCTTTCTGAAAATT 294
consensus_1507#1      TGATAGGATAGGCCGGATAAAAACTAATAAACAT----GACGCCAGGCGTCATCACAACA 283
                      *   * ****  ** **  **  * *  *   **    ** *  *  * *  * * **  

consensus_1507#0      CTCATCTAGATGACCTC-TACACAAGATATCGGCAACGACTGCGAAGATCGTTGT-TCAT 352
consensus_1507#1      CGCCTCCATATTTAATCATTCACGGGCACTTGCTAACGAAAGGATAGAATGCGACGTCGT 343
                      * * ** * **    ** * ***  *   * *  *****  *   ***  *     ** *

consensus_1507#0      CACTGGCCTGGGAATATCGATACTCTCTTGCATCACGTCAATCGTCCTATGTGCGCTTCA 412
consensus_1507#1      GCGCAACTCGTGAAAAT-AGCAGCATCGTGCGT--CGTCGGCTGTATGGTTCAAAC---- 396
                            *  * *** **    *   ** *** *  ****    **    *     *    

consensus_1507#0      TGATGCGATTCTGGCCGATGTAGCGCTGCTGGCTGGTGCCTCCACAGTGCTATGTGGAAT 472
consensus_1507#1      ------------------------------------------------------------
                                                                                  

consensus_1507#0      CCTGGTGGCTTTACAATTCCCGACAGTGATGAACTCGCCCCTGGCTGCTCTTTCCTTCGC 532
consensus_1507#1      ------------------------------------------------------------
                                                                                  

consensus_1507#0      AATTCTGACCACTGGAACGATTGGTGCCATATCCACGTTCGTCGGTACACAGCTCGCGCC 592
consensus_1507#1      ------------------------------------------------------------
                                                                                  

consensus_1507#0      TTTGCCACTGTTTGCATTGATACTTGGTGTCCACACGATGCTACCAATATCTTGGCCGGT 652
consensus_1507#1      ------------------------------------------------------------
                                                                                  

consensus_1507#0      ATCAGTGGTGCTGGCTGTGTTGCTCTGCATCGTCCACATTGGA 695
consensus_1507#1      -------------------------------------------