cluster # 1509

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Anopheles gambiae
cluster # 1509 cluster # 1509 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1509#0 length = 621 sequences # 1

consensus_1509#1 length = 246 sequences # 1

consensusID : consensus_1509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAGTATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGAAAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATATATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGGGAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAACACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTACTGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGCGTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAGGCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAGTCAATAAGGTAGGGAAAACGA]

[+] EMBL BM609293             [CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAGTATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGAAAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATATATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGGGAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAACACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTACTGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGCGTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAGGCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAGTCAATAAGGTAGGGAAAACGA]




>consensus_1509#0
CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTT
ATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAG
TATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGA
AAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATAT
ATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGG
GAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAAC
ACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTAC
TGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGC
GTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAG
GCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAG
TCAATAAGGTAGGGAAAACGA

consensusID : consensus_1509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence

                              [GGGAACAAAGTGGAACACGAGNATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAACAGACAAATTAGACGCATGCGTGGAAGGTGGAGAATAGATGATCCCCTTCCGCAAGAACGATTTCAGAACAAACAAACAAATAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGNA]

[+] EMBL BX619208             [GGGAACAAAGTGGAACACGAGNATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAACAGACAAATTAGACGCATGCGTGGAAGGTGGAGAATAGATGATCCCCTTCCGCAAGAACGATTTCAGAACAAACAAACAAATAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGNA]




>consensus_1509#1
GGGAACAAAGTGGAACACGAGNATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAA
CAGACAAATTAGACGCATGCGTGGAAGGTGGAGAATAGATGATCCCCTTCCGCAAGAACG
ATTTCAGAACAAACAAACAAATAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGA
TGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCC
AGGGNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1509#0      CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTT 60
consensus_1509#1      ------------------------------------------------------------
                                                                                  

consensus_1509#0      ATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAG 120
consensus_1509#1      ------------------------------------------------------GGGAAC 6
                                                                             ** * 

consensus_1509#0      TATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGA 180
consensus_1509#1      AAAGTGGAACACGAGN----ATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAACA 62
                       *   *** **   *     *  * **  *   *  *  * ***      **** *   *

consensus_1509#0      AAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATAT 240
consensus_1509#1      GACAA--ATTAGACGCATGCGTGGAA-------------------GGTGGAGA---ATAG 98
                       *  *  ****   ******    *                    * ** * *   *** 

consensus_1509#0      ATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGG 300
consensus_1509#1      ATGATCCCCTTCCGCAA-GAACGATTTCAGAACAAACAAACAAATAGGCATACCGAAAAG 157
                      **  **  ** *      *  *  **     ** *  *   *  *   * * *    * *

consensus_1509#0      GAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAAC 360
consensus_1509#1      GGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAAC--ATTCGCTT 215
                      * *    ** * *  * **    *****  ** *** ***  *     **   * *    

consensus_1509#0      ACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTAC 420
consensus_1509#1      ACTTCCTTTCTGTGTCGTGTATTCCAGGGNA----------------------------- 246
                      ***       ** *  * * * * **                                  

consensus_1509#0      TGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGC 480
consensus_1509#1      ------------------------------------------------------------
                                                                                  

consensus_1509#0      GTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAG 540
consensus_1509#1      ------------------------------------------------------------
                                                                                  

consensus_1509#0      GCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAG 600
consensus_1509#1      ------------------------------------------------------------
                                                                                  

consensus_1509#0      TCAATAAGGTAGGGAAAACGA 621
consensus_1509#1      ---------------------