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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAGTTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCAGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTACATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATTTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC]
[+] EMBL BM621271 [CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAGTTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCAGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTACATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATTTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC]
consensusID : consensus_1532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG]
[+] EMBL BM608971 [CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1532#0 CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAG 60
consensus_1532#1 ------------------------------------------------------------
consensus_1532#0 TTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAA-AATTATAACC 119
consensus_1532#1 -----------------CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACC 43
* ************* ** ** **** *** **********
consensus_1532#0 AGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTA 179
consensus_1532#1 AGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTC-- 101
******* ******* ****** ******* ************ ********* *
consensus_1532#0 CATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTAT 239
consensus_1532#1 -ATTG-TTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTAT 159
*** ****** ********* ************ ***** ****** **********
consensus_1532#0 TTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCT 299
consensus_1532#1 TTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCT 219
********* ************* *********************************
consensus_1532#0 ACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAA-GATAAGAAATTCGTAC 358
consensus_1532#1 ACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTAC 279
***************** ********************** ** ********* ******
consensus_1532#0 AGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCT 418
consensus_1532#1 AGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCT 339
************************************************************
consensus_1532#0 AATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGG-TACCGGGGTATG 477
consensus_1532#1 AATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATG 399
*************************** ******************* ************
consensus_1532#0 AGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAA 537
consensus_1532#1 AGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAA 459
************************** * ********** ******************
consensus_1532#0 AAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAA 597
consensus_1532#1 AAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAA 519
*************************************** ********************
consensus_1532#0 AGCAAAACTGCATCCTCCC-----CCCTCATGTGACCATGGTACTGTTTGTGGTAATGG- 651
consensus_1532#1 AGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGT 579
******************* **************** ******************
consensus_1532#0 GTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC-------- 693
consensus_1532#1 GAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG 629
* ************************* ********* ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||