cluster # 1546

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Anopheles gambiae
cluster # 1546 cluster # 1546 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1546#0 length = 517 sequences # 1

consensus_1546#1 length = 416 sequences # 1

consensusID : consensus_1546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [CCGGATCTCTGGATCCATGACCATCCTTTTCCTTTGATTTGTTCTTCTCCCTATGGAGCCTTTTTCCATATGAAATCCATCCTAATGCACAATCATCTCCCCCTTTTTTCCGCAAAGGGACTAGAAAAACGTTGGGTTCGTGCGCGTACGCAGCAAACACACGCCCCCCCAACACAGCGCAAGGAAGTAAGTTAAAGTATAATTAGTCCAAAGAGAGAAGGCACGTACGTAGTATCCTTGGGTTGTTGTTTTAGTGTTACCAGTTATGTGTTCCTGTTGTTGTTGTTGTTGTTTGGCGCGTTTTTTTTTTACTATCCCCAGACGCTTCTATCATCTGTCAGGAGATGTTCGCTGTGCTACCTGCCCTGCACGCTCTGTCTACCTTCATTAATAGCAAATCCGTGGCAAATATCGAAATCAAAACAAACAGATACCCTCTGAATCTAGTGGTATCGAAGCGTTTCTACTTTAGCGACAGATAGTGGAACTAACACAGATAGTGTGACTGTCAGCCTAG]

[+] EMBL BM608734             [CCGGATCTCTGGATCCATGACCATCCTTTTCCTTTGATTTGTTCTTCTCCCTATGGAGCCTTTTTCCATATGAAATCCATCCTAATGCACAATCATCTCCCCCTTTTTTCCGCAAAGGGACTAGAAAAACGTTGGGTTCGTGCGCGTACGCAGCAAACACACGCCCCCCCAACACAGCGCAAGGAAGTAAGTTAAAGTATAATTAGTCCAAAGAGAGAAGGCACGTACGTAGTATCCTTGGGTTGTTGTTTTAGTGTTACCAGTTATGTGTTCCTGTTGTTGTTGTTGTTGTTTGGCGCGTTTTTTTTTTACTATCCCCAGACGCTTCTATCATCTGTCAGGAGATGTTCGCTGTGCTACCTGCCCTGCACGCTCTGTCTACCTTCATTAATAGCAAATCCGTGGCAAATATCGAAATCAAAACAAACAGATACCCTCTGAATCTAGTGGTATCGAAGCGTTTCTACTTTAGCGACAGATAGTGGAACTAACACAGATAGTGTGACTGTCAGCCTAG]




>consensus_1546#0
CCGGATCTCTGGATCCATGACCATCCTTTTCCTTTGATTTGTTCTTCTCCCTATGGAGCC
TTTTTCCATATGAAATCCATCCTAATGCACAATCATCTCCCCCTTTTTTCCGCAAAGGGA
CTAGAAAAACGTTGGGTTCGTGCGCGTACGCAGCAAACACACGCCCCCCCAACACAGCGC
AAGGAAGTAAGTTAAAGTATAATTAGTCCAAAGAGAGAAGGCACGTACGTAGTATCCTTG
GGTTGTTGTTTTAGTGTTACCAGTTATGTGTTCCTGTTGTTGTTGTTGTTGTTTGGCGCG
TTTTTTTTTTACTATCCCCAGACGCTTCTATCATCTGTCAGGAGATGTTCGCTGTGCTAC
CTGCCCTGCACGCTCTGTCTACCTTCATTAATAGCAAATCCGTGGCAAATATCGAAATCA
AAACAAACAGATACCCTCTGAATCTAGTGGTATCGAAGCGTTTCTACTTTAGCGACAGAT
AGTGGAACTAACACAGATAGTGTGACTGTCAGCCTAG

consensusID : consensus_1546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [CCGCCCACGCGTCCGGTGCATTAGGATGGATTTCATATGGAAAAAGGCTCCATAGGGAGAAGAACAAATCAAAGGAAAACGGAAGAAAAAACAAACAAAAGTGCGAATCTTGCTCTGTAACACAGGTTAAATTTAAACGTTTTTTTTTGTTTGCAATATTTAGTTTAAGAATCGATTTCTCGATATTATAGCGTCGCTGGAAGCGCTAGCGATAGGAAAAGAAAATGGTGAGGGAGGAGAAGGAGGGGGGGGGGGAGATCCGGCGGGGGAATGAGCAAGGGTAAAGATCAACCCTGCGCCTTTCGCCGCGAGGTCCCGGACGTGCCAACCGTGCTGTACATAGTTTCGTTGCGTTTAATCGTTTTTGCTTAATAATTTATGAGATCCCCAGGCCGGGATTATTTTAAACCGTTCAT]

[+] EMBL BM650077             [CCGCCCACGCGTCCGGTGCATTAGGATGGATTTCATATGGAAAAAGGCTCCATAGGGAGAAGAACAAATCAAAGGAAAACGGAAGAAAAAACAAACAAAAGTGCGAATCTTGCTCTGTAACACAGGTTAAATTTAAACGTTTTTTTTTGTTTGCAATATTTAGTTTAAGAATCGATTTCTCGATATTATAGCGTCGCTGGAAGCGCTAGCGATAGGAAAAGAAAATGGTGAGGGAGGAGAAGGAGGGGGGGGGGGAGATCCGGCGGGGGAATGAGCAAGGGTAAAGATCAACCCTGCGCCTTTCGCCGCGAGGTCCCGGACGTGCCAACCGTGCTGTACATAGTTTCGTTGCGTTTAATCGTTTTTGCTTAATAATTTATGAGATCCCCAGGCCGGGATTATTTTAAACCGTTCAT]




>consensus_1546#1
CCGCCCACGCGTCCGGTGCATTAGGATGGATTTCATATGGAAAAAGGCTCCATAGGGAGA
AGAACAAATCAAAGGAAAACGGAAGAAAAAACAAACAAAAGTGCGAATCTTGCTCTGTAA
CACAGGTTAAATTTAAACGTTTTTTTTTGTTTGCAATATTTAGTTTAAGAATCGATTTCT
CGATATTATAGCGTCGCTGGAAGCGCTAGCGATAGGAAAAGAAAATGGTGAGGGAGGAGA
AGGAGGGGGGGGGGGAGATCCGGCGGGGGAATGAGCAAGGGTAAAGATCAACCCTGCGCC
TTTCGCCGCGAGGTCCCGGACGTGCCAACCGTGCTGTACATAGTTTCGTTGCGTTTAATC
GTTTTTGCTTAATAATTTATGAGATCCCCAGGCCGGGATTATTTTAAACCGTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1546#0      CCGGATCTCTGGATCCATGACCATCCTTTTCCTTTGATTTGTTCTTCTCCCTATGGAGCC 60
consensus_1546#1      ------------------------------------------------------------
                                                                                  

consensus_1546#0      TTTTTCCATATGAAATCCATCCTAATGCACAATCATCTCCCCCTTTTTTCCGCAAAGGGA 120
consensus_1546#1      ----------------------------CCGCCCACGCGTCCGGTGCATTAGGATGGATT 32
                                                   *   **     **  *   *  * *  *   

consensus_1546#0      CTAGAAAAACGTTGGGTTCGTGCGCGTACGCAGCAAACACACGCCCCCCCAACACAGCGC 180
consensus_1546#1      TCATATGGAAAAAGGCTCCATAGGGAGAAGAACAAATCAAAGGAAAACGGAAGAAAAAAC 92
                        * *   *    ** * * *  *   * * *  ** ** * *    *  ** * *   *

consensus_1546#0      AAGGAAGTAAGTTAAAGTATAATTAGTCCAAAGAGAGAAGGCACGTACGTAGTATCCTTG 240
consensus_1546#1      AAACAA--AAGTGCGAATCTTGCTCTGTAACACAGGTTAAATTTAAACGT--TTTTTTTT 148
                      **  **  ****   * * *   *     * * **   *       ****  * *  ** 

consensus_1546#0      GGTTGTTGTTTTAGTGTTACCAGTTATGTGTTCCTGTTGTTGTTGTTGTTGTTTGGCGCG 300
consensus_1546#1      GTTTGCAATATTTAGTTTAAGAAT--CGATTTCTCGATATTATAGC-GTCGCTGGAAGCG 205
                      * ***   * **    ***  * *   *  ***  * * ** * *  ** * * *  ***

consensus_1546#0      TTTTTTTTTTACTATCCCCAGACGCTTCTATCATCTGTCAGGAGATGTTCGCTGTGCTAC 360
consensus_1546#1      CTAGCGAT--AGGAAAAGAAAATGGTGAGGGAGGAGAAGGAGGGGGGGGGGGAGATCCGG 263
                       *     *  *  *     * * * *               * *  *   *  *  *   

consensus_1546#0      CTGCCCTGCACGCTCTGTCTACCTTCATTAATAGCAAATCCGTGGCAAATATCGAAATCA 420
consensus_1546#1      CGGGGGAATGAGCAAGGGTAAAGATCAACCCTGCGCCTTTCGCCGCGAGGTCCCGGAC-- 321
                      * *        **   *   *   ***    *      * **  ** *    *   *   

consensus_1546#0      AAACAAACAGATACCCTCTGAATCTAGTGGTATCGAAGCGTTTCTACTTTAGCGACAGAT 480
consensus_1546#1      GTGCCAACCGTGCTGTACATAGTTTCGTTGCGTTTAATCGTTTTTGCTT-AATAATTTAT 380
                         * *** *       *  * * * ** *  *  ** ***** * *** *   *   **

consensus_1546#0      AGTGGAACTAACACAGATAGTGTGACTGTCAGCCTAG 517
consensus_1546#1      GA-GATCCCCAGGCCGGGATTATTTTAAACCGTTCAT 416
                         *   *  *  * *  * * *      * *   *