cluster # 1550

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Anopheles gambiae
cluster # 1550 cluster # 1550 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1550#0 length = 614 sequences # 1

consensus_1550#1 length = 288 sequences # 1

consensusID : consensus_1550#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGCGGACGCGTGGGTGCACGGGTTGGCCCCGTGGCAGATGCCAAACAATGGTGGTAATGGGGGAGGCGGTGGTGGTGGTGGTGCCGGTGGTGGCAATAACCAGCATTCGGGAGGCATGCCACCGTTCGGTGGTGGTTACGGCGATGAGGACGGTGGCCGATCGATGGACGCATTTAATCTACAACGACCTCCACCGCCGATACCGGGAGGGCCGCCGCCGTTCGGTAACCTTAACCCGAATCCGTTCGCCATGATGGGTGGCCAGAACGAGGAGGAGGGTGGTGGCTACCACCAAAACAACAGCAACAACAATCACCACAATTCCGGCAATCATAGGAACGATTTTAACCGGAATGACGATTGGCGCAACGACGGTGGAGGCCATCGGGGCAACCACCGGAATCGTGGCGGAGGCAGAGACTTTCGGGACGATCGAGGTGGTGGTGGAGGTGGAGGTGGACGGCGCGATCGCCGGTTTGGTGGACGTGGACGGAACTGAGGCCCAAGCGGCATTTAGCGTCTCTCATCGTCGTCGTCGTACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGTGTGATTGTCGAAAAGGGAAGCGTTGGTT]

[+] EMBL BM608674             [CCGCGGACGCGTGGGTGCACGGGTTGGCCCCGTGGCAGATGCCAAACAATGGTGGTAATGGGGGAGGCGGTGGTGGTGGTGGTGCCGGTGGTGGCAATAACCAGCATTCGGGAGGCATGCCACCGTTCGGTGGTGGTTACGGCGATGAGGACGGTGGCCGATCGATGGACGCATTTAATCTACAACGACCTCCACCGCCGATACCGGGAGGGCCGCCGCCGTTCGGTAACCTTAACCCGAATCCGTTCGCCATGATGGGTGGCCAGAACGAGGAGGAGGGTGGTGGCTACCACCAAAACAACAGCAACAACAATCACCACAATTCCGGCAATCATAGGAACGATTTTAACCGGAATGACGATTGGCGCAACGACGGTGGAGGCCATCGGGGCAACCACCGGAATCGTGGCGGAGGCAGAGACTTTCGGGACGATCGAGGTGGTGGTGGAGGTGGAGGTGGACGGCGCGATCGCCGGTTTGGTGGACGTGGACGGAACTGAGGCCCAAGCGGCATTTAGCGTCTCTCATCGTCGTCGTCGTACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGTGTGATTGTCGAAAAGGGAAGCGTTGGTT]




>consensus_1550#0
CCGCGGACGCGTGGGTGCACGGGTTGGCCCCGTGGCAGATGCCAAACAATGGTGGTAATG
GGGGAGGCGGTGGTGGTGGTGGTGCCGGTGGTGGCAATAACCAGCATTCGGGAGGCATGC
CACCGTTCGGTGGTGGTTACGGCGATGAGGACGGTGGCCGATCGATGGACGCATTTAATC
TACAACGACCTCCACCGCCGATACCGGGAGGGCCGCCGCCGTTCGGTAACCTTAACCCGA
ATCCGTTCGCCATGATGGGTGGCCAGAACGAGGAGGAGGGTGGTGGCTACCACCAAAACA
ACAGCAACAACAATCACCACAATTCCGGCAATCATAGGAACGATTTTAACCGGAATGACG
ATTGGCGCAACGACGGTGGAGGCCATCGGGGCAACCACCGGAATCGTGGCGGAGGCAGAG
ACTTTCGGGACGATCGAGGTGGTGGTGGAGGTGGAGGTGGACGGCGCGATCGCCGGTTTG
GTGGACGTGGACGGAACTGAGGCCCAAGCGGCATTTAGCGTCTCTCATCGTCGTCGTCGT
ACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGTGTGATTGTCGAAAA
GGGAAGCGTTGGTT

consensusID : consensus_1550#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [CCGGTTTGGTGGACGTGGAAGGAATTGAGGCCCATACGGCATCTAGCTTCTTTCGTCTCCGTCGTCGTCGTCGTACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGTGTGATTGTCGAAAAGGGAAGCGTTGGTTATTGGTAAAAAGAAAGTTAGCATTTAAGGATGCATACGCTAAGCCCCGTGTACAAATGACTGTTTTCCGATGTAAAAGATAGCAAAAAAAAAGAAGGAATAAAGAAGATGCGTCTGCGTGAACCGTAGACCCGCAAGCTC]

[+] EMBL BX615975             [CCGGTTTGGTGGACGTGGAAGGAATTGAGGCCCATACGGCATCTAGCTTCTTTCGTCTCCGTCGTCGTCGTCGTACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGTGTGATTGTCGAAAAGGGAAGCGTTGGTTATTGGTAAAAAGAAAGTTAGCATTTAAGGATGCATACGCTAAGCCCCGTGTACAAATGACTGTTTTCCGATGTAAAAGATAGCAAAAAAAAAGAAGGAATAAAGAAGATGCGTCTGCGTGAACCGTAGACCCGCAAGCTC]




>consensus_1550#1
CCGGTTTGGTGGACGTGGAAGGAATTGAGGCCCATACGGCATCTAGCTTCTTTCGTCTCC
GTCGTCGTCGTCGTACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGT
GTGATTGTCGAAAAGGGAAGCGTTGGTTATTGGTAAAAAGAAAGTTAGCATTTAAGGATG
CATACGCTAAGCCCCGTGTACAAATGACTGTTTTCCGATGTAAAAGATAGCAAAAAAAAA
GAAGGAATAAAGAAGATGCGTCTGCGTGAACCGTAGACCCGCAAGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1550#0      CCGCGGACGCGTGGGTGCACGGGTTGGCCCCGTGGCAGATGCCAAACAATGGTGGTAATG 60
consensus_1550#1      ------------------------------------------------------------
                                                                                  

consensus_1550#0      GGGGAGGCGGTGGTGGTGGTGGTGCCGGTGGTGGCAATAACCAGCATTCGGGAGGCATGC 120
consensus_1550#1      ------------------------------------------------------------
                                                                                  

consensus_1550#0      CACCGTTCGGTGGTGGTTACGGCGATGAGGACGGTGGCCGATCGATGGACGCATTTAATC 180
consensus_1550#1      ------CCGGTT-TGGTGGACGTGGAAGGAATTGAGGCCCATACGGCATCTAGCTTCTTT 53
                             ****  ****    * *    * *  * **** **       *    **  * 

consensus_1550#0      TACAACGACCTCCACCGCCGATACCGGGAGGGCCGCCGCCGTTCGGTAACCTTAACCCGA 240
consensus_1550#1      CGTCTCCGTCGTCGTCGTCG-TACCACAACGGAAG--GTTGTACGAATGTGGCTGAAGGA 110
                           *   *  *  ** ** ****   * **  *  *  ** **             **

consensus_1550#0      ATCCGTTCGCCATGATGGGTGGCCAGAACGAGGAGGAGGGTGGTGGCTACCACCAAAACA 300
consensus_1550#1      TCGCGTTTGT-GTGATTGTCGA--AAAGGGAAGCGTTGGTTATTGGTAAAAAGAAAGTTA 167
                         **** *   **** *  *   * *  ** * *  ** *  ***  *  *  **   *

consensus_1550#0      ACAGC-AACAACAATCACCACAATTCCGGCAATCATAGGAACGATTTTAACCGGAATGAC 359
consensus_1550#1      GCATTTAAGGATGCATACGCTAAGCCCCGTGTACAAATGACTGTTTT---CCGATGTAAA 224
                       **   **  *     **   **  ** *    ** * **  * ***   ***   * * 

consensus_1550#0      GATTGGCGCAACGACGGTGGAGGCCATCGGG--GCAACCACCGGAATCGTGGCGGAGGCA 417
consensus_1550#1      AGATAGCAAAAAAAAAGAAGGAATAAAGAAGATGCGTCTGCGTGAACCGTA---GACCCG 281
                         * **  **  *  *  *     *    *  **  *  *  *** ***    **  * 

consensus_1550#0      GAGACTTTCGGGACGATCGAGGTGGTGGTGGAGGTGGAGGTGGACGGCGCGATCGCCGGT 477
consensus_1550#1      CAAGCTC----------------------------------------------------- 288
                       *  **                                                      

consensus_1550#0      TTGGTGGACGTGGACGGAACTGAGGCCCAAGCGGCATTTAGCGTCTCTCATCGTCGTCGT 537
consensus_1550#1      ------------------------------------------------------------
                                                                                  

consensus_1550#0      CGTACCACAACGGAAGGTTGTACGAATGTGGCTGAAGGATCGCGTTTGTGTGATTGTCGA 597
consensus_1550#1      ------------------------------------------------------------
                                                                                  

consensus_1550#0      AAAGGGAAGCGTTGGTT 614
consensus_1550#1      -----------------