cluster # 1555

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Anopheles gambiae
cluster # 1555 cluster # 1555 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1555#0 length = 430 sequences # 1

consensus_1555#1 length = 150 sequences # 1

consensusID : consensus_1555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCATCCCCGGCTGTGCGATTACACCGGTCTGTACTACTGTCCCGCGTGCCACTGGAACGATACGAGCATCATACCGGCACGCATCACCAACAACTGGGACTTTGTGCCGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAAACCCGTCATCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGCCGAGGTGAAGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCGGCTGGCCGACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGAAATCGATCGAGCTGTACA]

[+] EMBL BM621039             [AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCATCCCCGGCTGTGCGATTACACCGGTCTGTACTACTGTCCCGCGTGCCACTGGAACGATACGAGCATCATACCGGCACGCATCACCAACAACTGGGACTTTGTGCCGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAAACCCGTCATCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGCCGAGGTGAAGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCGGCTGGCCGACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGAAATCGATCGAGCTGTACA]




>consensus_1555#0
AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGGACTCGAATTCAAAGCGGAAA
AACTGAACTCAATTCATCCCCGGCTGTGCGATTACACCGGTCTGTACTACTGTCCCGCGT
GCCACTGGAACGATACGAGCATCATACCGGCACGCATCACCAACAACTGGGACTTTGTGC
CGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAAACCCGTCA
TCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGCCGAGGTGA
AGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCGGCTGGCCG
ACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGAAATCGATC
GAGCTGTACA

consensusID : consensus_1555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCCCGCGTGCCACTGGGAACGATAACGAGCATTCATACCGGCA]

[+] EMBL AL692734             [AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCCCGCGTGCCACTGGGAACGATAACGAGCATTCATACCGGCA]




>consensus_1555#1
AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAAAAACTGAACT
CAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCCCGCGTGCCAC
TGGGAACGATAACGAGCATTCATACCGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1555#0      AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGG-ACTCGAATTCAAAGCGGAA 59
consensus_1555#1      ----------AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAA 50
                                  **********  * ************** *******************

consensus_1555#0      AAACTGAACTCAATTCA-TCCCCGGCTGTGCGA-TTACACCGGTCTGTACT--ACTGTCC 115
consensus_1555#1      AAACTGAACTCAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCC 110
                      *****************  **************  ***************   *******

consensus_1555#0      CGCGTGCCACTGG-AACGATA-CGAGCAT-CATACCGGCACGCATCACCAACAACTGGGA 172
consensus_1555#1      CGCGTGCCACTGGGAACGATAACGAGCATTCATACCGGCA-------------------- 150
                      ************* ******* ******* **********                    

consensus_1555#0      CTTTGTGCCGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAA 232
consensus_1555#1      ------------------------------------------------------------
                                                                                  

consensus_1555#0      ACCCGTCATCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGC 292
consensus_1555#1      ------------------------------------------------------------
                                                                                  

consensus_1555#0      CGAGGTGAAGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCG 352
consensus_1555#1      ------------------------------------------------------------
                                                                                  

consensus_1555#0      GCTGGCCGACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGA 412
consensus_1555#1      ------------------------------------------------------------
                                                                                  

consensus_1555#0      AATCGATCGAGCTGTACA 430
consensus_1555#1      ------------------