cluster # 1573

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1573 cluster # 1573 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1573#0 length = 555 sequences # 1

consensus_1573#1 length = 220 sequences # 1

consensusID : consensus_1573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [CCCGAGGTTTGCTCCGGTTATTGTGAAACCTGTTTCACTGATTTGTGATGAAAAATCGAATGAGCAAAGCGTATTAATTCAACTCTCCTACCAGCTGTCGGTGGGAGAAGATCTACGCCCCGGCTACAAGACCGTTCTGTCGAATGTAATGCAAATCTTTTACAATCTTAGCAACATGAACATCGTAGTGTCGGACGACGAATGTTTGTTCAAGGTGCTCGCCCGGCAGATGAAAAAGAGGCTGTGTTCCTTGGCTGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTATTGAAGGAATGAAGGAATCTTCCATGGTGAAGGACGTATGCGAGTTCAATGCGTTCCTAAAAACGACCAACTTTGTAGATGGCGAAAATGACGATTTACTGAGGAATACGCCAATTCGATCGAAACAATTCACCAGAAAAAAGCTTTGCGACAATGTGCTGGACACGGCTGTACAAATAATGAAACATGAGAGCCATGAAATGGTGCTAATCGAAGATCACGAGTACCAGTTCGTCGGCCAGTACTTCGGCCCGCCTCTCA]

[+] EMBL AL692870             [CCCGAGGTTTGCTCCGGTTATTGTGAAACCTGTTTCACTGATTTGTGATGAAAAATCGAATGAGCAAAGCGTATTAATTCAACTCTCCTACCAGCTGTCGGTGGGAGAAGATCTACGCCCCGGCTACAAGACCGTTCTGTCGAATGTAATGCAAATCTTTTACAATCTTAGCAACATGAACATCGTAGTGTCGGACGACGAATGTTTGTTCAAGGTGCTCGCCCGGCAGATGAAAAAGAGGCTGTGTTCCTTGGCTGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTATTGAAGGAATGAAGGAATCTTCCATGGTGAAGGACGTATGCGAGTTCAATGCGTTCCTAAAAACGACCAACTTTGTAGATGGCGAAAATGACGATTTACTGAGGAATACGCCAATTCGATCGAAACAATTCACCAGAAAAAAGCTTTGCGACAATGTGCTGGACACGGCTGTACAAATAATGAAACATGAGAGCCATGAAATGGTGCTAATCGAAGATCACGAGTACCAGTTCGTCGGCCAGTACTTCGGCCCGCCTCTCA]




>consensus_1573#0
CCCGAGGTTTGCTCCGGTTATTGTGAAACCTGTTTCACTGATTTGTGATGAAAAATCGAA
TGAGCAAAGCGTATTAATTCAACTCTCCTACCAGCTGTCGGTGGGAGAAGATCTACGCCC
CGGCTACAAGACCGTTCTGTCGAATGTAATGCAAATCTTTTACAATCTTAGCAACATGAA
CATCGTAGTGTCGGACGACGAATGTTTGTTCAAGGTGCTCGCCCGGCAGATGAAAAAGAG
GCTGTGTTCCTTGGCTGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTATTGAAG
GAATGAAGGAATCTTCCATGGTGAAGGACGTATGCGAGTTCAATGCGTTCCTAAAAACGA
CCAACTTTGTAGATGGCGAAAATGACGATTTACTGAGGAATACGCCAATTCGATCGAAAC
AATTCACCAGAAAAAAGCTTTGCGACAATGTGCTGGACACGGCTGTACAAATAATGAAAC
ATGAGAGCCATGAAATGGTGCTAATCGAAGATCACGAGTACCAGTTCGTCGGCCAGTACT
TCGGCCCGCCTCTCA

consensusID : consensus_1573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [GCTCGCCCGGCAGAAGAAAAAGAGGCTGAGTACCTGGCCGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTACGGAAGGAATGAAGGAATCTGCCATGGCGAAGGACGAATGCGAGTGCAAGGCGTACCTAAAAACGACCAACTCGGTAGAGGGCGAAAATGACGACAAACTGAAGGAGCACGCCTCATCCGCAACCACTACGGAGGCTGAGAAG]

[+] EMBL BX608407             [GCTCGCCCGGCAGAAGAAAAAGAGGCTGAGTACCTGGCCGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTACGGAAGGAATGAAGGAATCTGCCATGGCGAAGGACGAATGCGAGTGCAAGGCGTACCTAAAAACGACCAACTCGGTAGAGGGCGAAAATGACGACAAACTGAAGGAGCACGCCTCATCCGCAACCACTACGGAGGCTGAGAAG]




>consensus_1573#1
GCTCGCCCGGCAGAAGAAAAAGAGGCTGAGTACCTGGCCGATGGAGCAATGTCTGGATCG
CGACATCCCCGACACTACGGAAGGAATGAAGGAATCTGCCATGGCGAAGGACGAATGCGA
GTGCAAGGCGTACCTAAAAACGACCAACTCGGTAGAGGGCGAAAATGACGACAAACTGAA
GGAGCACGCCTCATCCGCAACCACTACGGAGGCTGAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1573#0      CCCGAGGTTTGCTCCGGTTATTGTGAAACCTGTTTCACTGATTTGTGATGAAAAATCGAA 60
consensus_1573#1      ------------------------------------------------------------
                                                                                  

consensus_1573#0      TGAGCAAAGCGTATTAATTCAACTCTCCTACCAGCTGTCGGTGGGAGAAGATCTACGCCC 120
consensus_1573#1      ------------------------------------------------------------
                                                                                  

consensus_1573#0      CGGCTACAAGACCGTTCTGTCGAATGTAATGCAAATCTTTTACAATCTTAGCAACATGAA 180
consensus_1573#1      ------------------------------------------------------------
                                                                                  

consensus_1573#0      CATCGTAGTGTCGGACGACGAATGTTTGTTCAAGGTGCTCGCCCGGCAGATGAAAAAGAG 240
consensus_1573#1      ------------------------------------GCTCGCCCGGCAGAAGAAAAAGAG 24
                                                          ************** *********

consensus_1573#0      GCTGTGTTCCTTGGCTGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTATTGAAG 300
consensus_1573#1      GCTGAGTACCT-GGCCGATGGAGCAATGTCTGGATCGCGACATCCCCGACACTACGGAAG 83
                      **** ** *** *** **************************************  ****

consensus_1573#0      GAATGAAGGAATCTTCCATGGTGAAGGACGTATGCGAGTTCAATGCGTTCCTAAAAACGA 360
consensus_1573#1      GAATGAAGGAATCTGCCATGGCGAAGGACGAATGCGAGTGCAAGGCGTACCTAAAAACGA 143
                      ************** ****** ******** ******** *** **** ***********

consensus_1573#0      CCAACTTTGTAGATGGCGAAAATGACGATTTACTGA-GGAATACGCCAATTCGATCGAAA 419
consensus_1573#1      CCAACTCGGTAGAGGGCGAAAATGACGACAAACTGAAGGAGCACGCC---TCATCCGCAA 200
                      ******  ***** **************   ***** ***  *****   **   ** **

consensus_1573#0      CAATTCACCAGA--AAAAAGCTTTGCGACAATGTGCTGGACACGGCTGTACAAATAATGA 477
consensus_1573#1      CCACTACGGAGGCTGAGAAG---------------------------------------- 220
                      * * *    **    * ***                                        

consensus_1573#0      AACATGAGAGCCATGAAATGGTGCTAATCGAAGATCACGAGTACCAGTTCGTCGGCCAGT 537
consensus_1573#1      ------------------------------------------------------------
                                                                                  

consensus_1573#0      ACTTCGGCCCGCCTCTCA 555
consensus_1573#1      ------------------