cluster # 1575

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Anopheles gambiae
cluster # 1575 cluster # 1575 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1575#0 length = 678 sequences # 1

consensus_1575#1 length = 504 sequences # 1

consensusID : consensus_1575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCCCTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAGAATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCATATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCGAACCGTAGGTGTAAAACAACAAGAAACCGCAAAAGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTGTACGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTGCTGAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGACTTCGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTACATCATCAACAAACTGCCATCGGGCGATGAGTGTTTCGTGTACCGGATCGGCGACCAGACCTTTGCCGACCTGCCGGATCTGCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGATGGTGCGCCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGAT]

[+] EMBL BM608299             [CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCCCTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAGAATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCATATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCGAACCGTAGGTGTAAAACAACAAGAAACCGCAAAAGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTGTACGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTGCTGAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGACTTCGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTACATCATCAACAAACTGCCATCGGGCGATGAGTGTTTCGTGTACCGGATCGGCGACCAGACCTTTGCCGACCTGCCGGATCTGCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGATGGTGCGCCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGAT]




>consensus_1575#0
CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCC
CTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAG
AATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCAT
ATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCGAACCGTAGGTGTAAAA
CAACAAGAAACCGCAAAAGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTGTA
CGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTGCT
GAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGACTT
CGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTACATCATCAACAAACTGCCATC
GGGCGATGAGTGTTTCGTGTACCGGATCGGCGACCAGACCTTTGCCGACCTGCCGGATCT
GCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGATGGTGCG
CCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGATCTGCC
GTTCAAGAAGGGTGAGAT

consensusID : consensus_1575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [AGAATCGCACGAGGTTACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGATACTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGCGGAACGGGGCGGGCCAAACGGGCCAGATACCGGTGCCGTACGTGACGCGGTACGAGGAAAACATTATCGAGCGGCCAAACTCGGGTGGTGGTGGTGGTGGCGGTGCTGGTCCGGGCCATCATCACCATCACCATGCACATCCGGCGACCGGTGGTGGTGGGATGCATCATTCGGAGAATTCGAACATTTTCAAATCGAACCTCAACCGGCAGCTGCCAGACACTGGCACGGGTTAAGCAGGAGCGCGTCCCGAACGCGTACGACGAGACGGCCCTGAAGCTGAGACGTCGGCGGACGTTATCAAGGTGCTGTAAGACGAACATCAACGGACAGTGGGAGGGTGAGCTGAAGGGGCAAGGATTGGCCACGTGTCAGCCGTTCAGCGCACGTGGNAGGTTTCA]

[+] EMBL BX469024             [AGAATCGCACGAGGTTACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGATACTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGCGGAACGGGGCGGGCCAAACGGGCCAGATACCGGTGCCGTACGTGACGCGGTACGAGGAAAACATTATCGAGCGGCCAAACTCGGGTGGTGGTGGTGGTGGCGGTGCTGGTCCGGGCCATCATCACCATCACCATGCACATCCGGCGACCGGTGGTGGTGGGATGCATCATTCGGAGAATTCGAACATTTTCAAATCGAACCTCAACCGGCAGCTGCCAGACACTGGCACGGGTTAAGCAGGAGCGCGTCCCGAACGCGTACGACGAGACGGCCCTGAAGCTGAGACGTCGGCGGACGTTATCAAGGTGCTGTAAGACGAACATCAACGGACAGTGGGAGGGTGAGCTGAAGGGGCAAGGATTGGCCACGTGTCAGCCGTTCAGCGCACGTGGNAGGTTTCA]




>consensus_1575#1
AGAATCGCACGAGGTTACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGATA
CTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGCGGAACGGGGCGGGCCAA
ACGGGCCAGATACCGGTGCCGTACGTGACGCGGTACGAGGAAAACATTATCGAGCGGCCA
AACTCGGGTGGTGGTGGTGGTGGCGGTGCTGGTCCGGGCCATCATCACCATCACCATGCA
CATCCGGCGACCGGTGGTGGTGGGATGCATCATTCGGAGAATTCGAACATTTTCAAATCG
AACCTCAACCGGCAGCTGCCAGACACTGGCACGGGTTAAGCAGGAGCGCGTCCCGAACGC
GTACGACGAGACGGCCCTGAAGCTGAGACGTCGGCGGACGTTATCAAGGTGCTGTAAGAC
GAACATCAACGGACAGTGGGAGGGTGAGCTGAAGGGGCAAGGATTGGCCACGTGTCAGCC
GTTCAGCGCACGTGGNAGGTTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1575#0      CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCC 60
consensus_1575#1      ------------------------------------------------------------
                                                                                  

consensus_1575#0      CTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAG 120
consensus_1575#1      ----------------------------------------------------------AG 2
                                                                                **

consensus_1575#0      AATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCAT 180
consensus_1575#1      AATCGCACGAGGTTACGGGAGCGATCCGGAC---------------GATCTGCCGTTCA- 46
                      ***** *** * **   ***  **  *  **                 ***  **  ** 

consensus_1575#0      ATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCG-AACCGTAGGTGTAAA 239
consensus_1575#1      ---AGAAGGGTGAGATACTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGC 103
                          **** *  *****  ** * *      *  *      * * **  ** *  *    

consensus_1575#0      ACAACAAGAAACCGCAAA-AGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTG 298
consensus_1575#1      GGAACGGGGCGGGCCAAACGGGCCAGATACCGGTGCCGTAC-GTGACGCGGTACGAGGAA 162
                        ***  *      ****  ***     ***  *** * **  ** *    * *** *  

consensus_1575#0      TACGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTG 358
consensus_1575#1      AACATT--ATCGAGCGGCCAAACTCGGGTGGTGGTG-GTGGTGGCGGTGCTGGTCCGGGC 219
                       **  *   ****** *  *     *** * **    *    * **   * * ** *   

consensus_1575#0      CTGAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGAC 418
consensus_1575#1      C---ATCATCACCATCACCATGCACATCCGG----CGAC----CGGTGGTGGTGGGATGC 268
                      *   *  * * * *       * *  ** **    ****    *   * * *****   *

consensus_1575#0      TTCGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTAC-ATCATCAACAAACTGCC 477
consensus_1575#1      ATCATTCGGAGAATTCGAACATTTTC-AAATCGAACCTCAACCGGCAGCTGCCAGACACT 327
                       ** * * * *  * **   *   ** ***  ** ** * **   ** *  * *    * 

consensus_1575#0      ATCGGGCGATGAGT-GTTTCGTGTACCGGATCGG--CGACCAGACCTTTGCCGACCTGCC 534
consensus_1575#1      GGCACGGGTTAAGCAGGAGCGCGTCCCGAACGCGTACGACGAGACGGCCCTGAAGCTGAG 387
                        *  * * * **  *   ** ** *** *   *  **** ****        * ***  

consensus_1575#0      GGATCTGCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGAT 594
consensus_1575#1      ACGTCGGCGGACGTTAT-CAAGGTGCTGTAAGACGA----ACATCAACGGACAGTGGGAG 442
                         ** ** * * ** * **** ***  **   ***    *** *   *  * *   ** 

consensus_1575#0      GGTGCGCCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGA 654
consensus_1575#1      GGTGAGCTGAAGGGGCAAGG--ATTGGCCACGTGTCAGCCGTTCAGCGCACGTGGNAGGT 500
                      **** ** *   **  ****  ****** *  *      **    * **     * * * 

consensus_1575#0      TCTGCCGTTCAAGAAGGGTGAGAT 678
consensus_1575#1      TTCA-------------------- 504
                      *