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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence
[CGCGTTATNCTGAGGGAAGTGATCGTACCACTANATNCGATCTAAAGCAGTNCGAGCTGAGAGTNCCTATACGCGAGGAGCAACAAGCCAGGANGAATTTATTTTATGGAAATGATAAAGTGTGTTCTTAGAGCGTATCAGTATNACATAACATAACAGCGTATACAGTGACCAGTCATTCAAAGCAAGCAACACAGTTTCCAAACACCAACTGCATATTGCAGCTCNAGTCGCTGGTAGTAANATGACAGGGAATTGCAATGCTTAGAATGGTCAGTCAAACAAGGCGTGTCAANACAGGTTGCAGCCNAGAATGTATGAGCACAACAATCGCAGGCATGTCTGTCGAATCTCGCCGACGTACATGAACTATCCGTACGAGACTAATACTAACGTCGCGCACTGGACACAATGTACGGNATCGGAATCACATACGGACATCTTCAGCACCTGNCNACATGTGGGNCCGGACAATGTGAACGCCAACACAATGCACATTGGGNATNGCAGCCAATNCAAATGCAACGGCAAGCACNNCCAGTCTTTCCTATGNACCCAAGCATACTCTCATACCAGCCCAGCANAGCAGTTGCAACCTNATCGTAANAAAACGGCATCCCTAAACTTNTTAATTGCTATGCGCTCTCCTATATCGNAANTACCAGNAGATACCNTTGTTCAGGAGAAGCCCGGATCTATCTATTGTAGCNATAAACCACAAAAGCTTGGCTCTGATCCCTTGAAGNTAACTGGCGAATCAACGCACGAAACTGGAAAGCATTGTNNAATACCTGGTACCGGGAACCAGAACAAGAACGAAGAAAATAAGTATACTTGGGTAGCGTTNGAATANAGGGAGCCA]
[+] EMBL AL692888 [CGCGTTATNCTGAGGGAAGTGATCGTACCACTANATNCGATCTAAAGCAGTNCGAGCTGAGAGTNCCTATACGCGAGGAGCAACAAGCCAGGANGAATTTATTTTATGGAAATGATAAAGTGTGTTCTTAGAGCGTATCAGTATNACATAACATAACAGCGTATACAGTGACCAGTCATTCAAAGCAAGCAACACAGTTTCCAAACACCAACTGCATATTGCAGCTCNAGTCGCTGGTAGTAANATGACAGGGAATTGCAATGCTTAGAATGGTCAGTCAAACAAGGCGTGTCAANACAGGTTGCAGCCNAGAATGTATGAGCACAACAATCGCAGGCATGTCTGTCGAATCTCGCCGACGTACATGAACTATCCGTACGAGACTAATACTAACGTCGCGCACTGGACACAATGTACGGNATCGGAATCACATACGGACATCTTCAGCACCTGNCNACATGTGGGNCCGGACAATGTGAACGCCAACACAATGCACATTGGGNATNGCAGCCAATNCAAATGCAACGGCAAGCACNNCCAGTCTTTCCTATGNACCCAAGCATACTCTCATACCAGCCCAGCANAGCAGTTGCAACCTNATCGTAANAAAACGGCATCCCTAAACTTNTTAATTGCTATGCGCTCTCCTATATCGNAANTACCAGNAGATACCNTTGTTCAGGAGAAGCCCGGATCTATCTATTGTAGCNATAAACCACAAAAGCTTGGCTCTGATCCCTTGAAGNTAACTGGCGAATCAACGCACGAAACTGGAAAGCATTGTNNAATACCTGGTACCGGGAACCAGAACAAGAACGAAGAAAATAAGTATACTTGGGTAGCGTTNGAATANAGGGAGCCA]
consensusID : consensus_1581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[ATTAGNCGATCAGNNCAGTTCTAGCTGAGAGTTCCTATCGCGAGGAGCAACAAGCCAGGAAGAATTTATTTTATGGAAATGATAAAGTGTGTTTTAGAGCGTATCAGTTTACATAACATAACAGCGTATCAGTGACCAGTATTAAAGAAGCANAACAGTTTCCAAAACAACTGATATGAGCTCAGTCGCTGGTAGTAATGAAGGAATTGAATGCTGCAATAGTCAGTCAACAGGCGGTAAAGGTTTGTAGCCAGATGTTGAGCACAACATNCGAGGATGTCTGTCGAATCTCGCCGACGTCATGAACTATCCGTCTGCTATACTACGTCGCGATGGAAAATGTCGGAATCGGATCACATCGACATCTTCCGAATGACAACATGTGGGACGGNANTGTGAAGCCNAANATGAATTGGATGAGCAATCAATGCAACGAAGACAAAGTCTATCCTTGGACCAAGATCTCTATACAGCCAGANGAGTTGCACTATCGTAAAAAACGATTCCTAACTATTATGCTGCGCTACTCTATANTCGAAAATCCAGAGATACCATTGTTCAGGGAGCAAGACGGGTCTNCTNACGTGCATAACCACCAAACCTGGCCTCTGATACCT]
[+] EMBL AL929877 [ATTAGNCGATCAGNNCAGTTCTAGCTGAGAGTTCCTATCGCGAGGAGCAACAAGCCAGGAAGAATTTATTTTATGGAAATGATAAAGTGTGTTTTAGAGCGTATCAGTTTACATAACATAACAGCGTATCAGTGACCAGTATTAAAGAAGCANAACAGTTTCCAAAACAACTGATATGAGCTCAGTCGCTGGTAGTAATGAAGGAATTGAATGCTGCAATAGTCAGTCAACAGGCGGTAAAGGTTTGTAGCCAGATGTTGAGCACAACATNCGAGGATGTCTGTCGAATCTCGCCGACGTCATGAACTATCCGTCTGCTATACTACGTCGCGATGGAAAATGTCGGAATCGGATCACATCGACATCTTCCGAATGACAACATGTGGGACGGNANTGTGAAGCCNAANATGAATTGGATGAGCAATCAATGCAACGAAGACAAAGTCTATCCTTGGACCAAGATCTCTATACAGCCAGANGAGTTGCACTATCGTAAAAAACGATTCCTAACTATTATGCTGCGCTACTCTATANTCGAAAATCCAGAGATACCATTGTTCAGGGAGCAAGACGGGTCTNCTNACGTGCATAACCACCAAACCTGGCCTCTGATACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1581#0 CGCGTTATNCTGAGGGAAGTGATCGTACCACTANATNCGATCTAAAGCAGTNCGAGCTGA 60
consensus_1581#1 -----------------------------ATTAGN--CGATC-AGNNCAGTTCTAGCTGA 28
* ** ***** * **** * ******
consensus_1581#0 GAGTNCCTATACGCGAGGAGCAACAAGCCAGGANGAATTTATTTTATGGAAATGATAAAG 120
consensus_1581#1 GAGTTCCTAT-CGCGAGGAGCAACAAGCCAGGAAGAATTTATTTTATGGAAATGATAAAG 87
**** ***** ********************** **************************
consensus_1581#0 TGTGTTCTTAGAGCGTATCAGTATNACATAACATAACAGCGTATACAGTGACCAGTCATT 180
consensus_1581#1 TGTGTT-TTAGAGCGTATCAGT-TTACATAACATAACAGCGTAT-CAGTGACCAGTA--T 142
****** *************** * ******************* *********** *
consensus_1581#0 CAAAGCAAGCAACACAGTTTCCAAACACCAACTGCATATTGCAGCTCNAGTCGCTGGTAG 240
consensus_1581#1 TAAAG-AAGCANAACAGTTTCCAAAA--CAACTG-ATAT--GAGCTCA-GTCGCTGGTAG 195
**** ***** ************ ****** **** ***** ***********
consensus_1581#0 TAANATGACAGGGAATTGCAATGCTTAGAATGGTCAGTCAAACAAGGCGTGTCAANACAG 300
consensus_1581#1 TAATG----AAGGAATTG-AATGCT-GCAATAGTCAGTCAAC--AGGCG-GTAAAG---G 243
*** * ******* ****** *** ********* ***** ** ** *
consensus_1581#0 GTTGCAGCCNAGAATGTATGAGCACAACAATCGCAGGCATGTCTGTCGAATCTCGCCGAC 360
consensus_1581#1 TTTGTAGCCA--GATGT-TGAGCACAACATNCGAGG--ATGTCTGTCGAATCTCGCCGAC 298
*** **** **** *********** ** * **********************
consensus_1581#0 GTACATGAACTATCCGTACGAGACTAATACTAACGTCGCGCACTGGACACAATGTACGGN 420
consensus_1581#1 GT-CATGAACTATCCGTCTG----CTATACTA-CGTCGCG--ATGGAA--AATGT-CGGA 347
** ************** * ****** ******* **** ***** ***
consensus_1581#0 ATCGGAATCACATACGGACATCTTCAGCACCTGNCNACATGTGGGNCCGGACAATGTGAA 480
consensus_1581#1 ATCGGA-TCACATC--GACATCTTCCGAA--TGACAACATGTGGGAC--GGNANTGTGAA 400
****** ****** ********* * * ** * ********* * * * ******
consensus_1581#0 CGCCAACACAATGCACATTGGGNATNGCAGCCAATNCAAATGCAACGGCAAGCACNNCCA 540
consensus_1581#1 GCCNAANATGA-----ATTGGATG-AGCAATCAATGCAA---CGAAGACAA--------A 443
* ** * * ***** *** **** *** * * * *** *
consensus_1581#0 GTCTTTCCTATGNACCCAAGCATACTCTCATACCAGCCCAGCANAGCAGTTGCAACCTNA 600
consensus_1581#1 GTCTATCCT-TGGACCAAG----ATCTCTATAC-AGCC----AGANGAGTTGCA---CTA 490
**** **** ** *** * * **** **** * * ******* *
consensus_1581#0 TCGTAANAAAACGGCATCCCTAAACTTNTTAATTGCTATGCGCTCTCCTATATCGNAANT 660
consensus_1581#1 TCGTAAAAAA-CG--ATTCCTAA--CTATTA--TGCT--GCGCTACTCTATANTCGAAAA 541
****** *** ** ** ***** * *** **** ***** ***** **
consensus_1581#0 ACCAGNAGATACCNTTGTTCAGGAGAAGCCCGGATCTATCTATTGTAGCNATAAACCACA 720
consensus_1581#1 TCCAGA-GATACCATTGTTCAGGGAG---CAAGACGGGTCTNCTNACGTGCATAACCACC 597
**** ****** ********* * ** *** * * ******
consensus_1581#0 AAAGCTTGGCTCTGATCCCTTGAAGNTAACTGGCGAATCAACGCACGAAACTGGAAAGCA 780
consensus_1581#1 AAACCTGGCCTCTGATACCT---------------------------------------- 617
*** ** * ******* ***
consensus_1581#0 TTGTNNAATACCTGGTACCGGGAACCAGAACAAGAACGAAGAAAATAAGTATACTTGGGT 840
consensus_1581#1 ------------------------------------------------------------
consensus_1581#0 AGCGTTNGAATANAGGGAGCCA 862
consensus_1581#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||