cluster # 1582

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Anopheles gambiae
cluster # 1582 cluster # 1582 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1582#0 length = 749 sequences # 1

consensus_1582#1 length = 438 sequences # 1

consensusID : consensus_1582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGACGCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTATATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAACAGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAACAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAGAGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAAACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTGAAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGATACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCTCCTTCTTTCTCTTTTGGTGGCAGAAGAGG]

[+] EMBL BX611303             [AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGACGCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTATATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAACAGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAACAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAGAGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAAACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTGAAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGATACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCTCCTTCTTTCTCTTTTGGTGGCAGAAGAGG]




>consensus_1582#0
AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGAC
GCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTAT
ATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAAC
AGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAA
CAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAG
AGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAA
ACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTG
AAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGA
TACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCT
TTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAA
CACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGT
ATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCT
CCTTCTTTCTCTTTTGGTGGCAGAAGAGG

consensusID : consensus_1582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [ATCCCCCGAGGTTAAAACAAAAAACAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTTTCTCTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTGTCCATTTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGTTTAGTTTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACACACGCCTAGTTGTGTAATT]

[+] EMBL AL692890             [ATCCCCCGAGGTTAAAACAAAAAACAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTTTCTCTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTGTCCATTTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGTTTAGTTTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACACACGCCTAGTTGTGTAATT]




>consensus_1582#1
ATCCCCCGAGGTTAAAACAAAAAACAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCT
AGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAAC
ACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGT
GATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTC
TTTCTCTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTG
TCCATTTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGT
TTAGTTTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACAC
ACGCCTAGTTGTGTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1582#0      AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGAC 60
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      GCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTAT 120
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      ATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAAC 180
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      AGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAA 240
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      CAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAG 300
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      AGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAA 360
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      ACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTG 420
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      AAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGA 480
consensus_1582#1      ---------------------------------------------------ATCCCCCGA 9
                                                                         ***    **

consensus_1582#0      TACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCT 540
consensus_1582#1      GGTTAAAACAAAAAA----CAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCTAGGCT 65
                          ***********    ********************* *******************

consensus_1582#0      TTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAA 600
consensus_1582#1      TTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAA 125
                      ************************************************************

consensus_1582#0      CACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGT 660
consensus_1582#1      CACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGT 185
                      ************************************************************

consensus_1582#0      ATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCT 720
consensus_1582#1      ATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTTTCT 245
                      ******************************************************** ***

consensus_1582#0      CCTTCTTTCTCTTTT-GGTGGCAGAAGAGG------------------------------ 749
consensus_1582#1      CTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTGTCCAT 305
                      *  ************ * **** * *****                              

consensus_1582#0      ------------------------------------------------------------
consensus_1582#1      TTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGTTTAGT 365
                                                                                  

consensus_1582#0      ------------------------------------------------------------
consensus_1582#1      TTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACACACGCC 425
                                                                                  

consensus_1582#0      -------------
consensus_1582#1      TAGTTGTGTAATT 438