cluster # 1585

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Anopheles gambiae
cluster # 1585 cluster # 1585 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1585#0 length = 634 sequences # 1

consensus_1585#1 length = 511 sequences # 1

consensusID : consensus_1585#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CCGCCCACGCGTCCGGCGAGCATCGCCCTCAGCTCGCCGGAAGTGACCACCGCTGGCACTACCGAAAATAGCGTCTCCGACTCGACGACCGGTGAGATGGAGCTCGTCTGGGCGTACGACTTCCGGGACGAGTCGGGCTACCGGCAGAAGGAGGTGCTGTTTTCCCTACAGCCGGTCTACACCAACGGGTGGACCAAAACCGGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAACACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCCAACGGTACCGTCCTGTCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGATCTGCGGACGCATCTGAGCCCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGACGGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAGGACGTGTACGGGCAGCTGCTGCACGGCATCCGGTACATCGATCTGCGCGTCGGGTACTACAAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGCATATCGCGGCTCCATCCGCTGATCAACGTGCTCGAGCAGATAAAGCGTTACGCACAGG]

[+] EMBL BM649255             [CCGCCCACGCGTCCGGCGAGCATCGCCCTCAGCTCGCCGGAAGTGACCACCGCTGGCACTACCGAAAATAGCGTCTCCGACTCGACGACCGGTGAGATGGAGCTCGTCTGGGCGTACGACTTCCGGGACGAGTCGGGCTACCGGCAGAAGGAGGTGCTGTTTTCCCTACAGCCGGTCTACACCAACGGGTGGACCAAAACCGGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAACACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCCAACGGTACCGTCCTGTCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGATCTGCGGACGCATCTGAGCCCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGACGGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAGGACGTGTACGGGCAGCTGCTGCACGGCATCCGGTACATCGATCTGCGCGTCGGGTACTACAAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGCATATCGCGGCTCCATCCGCTGATCAACGTGCTCGAGCAGATAAAGCGTTACGCACAGG]




>consensus_1585#0
CCGCCCACGCGTCCGGCGAGCATCGCCCTCAGCTCGCCGGAAGTGACCACCGCTGGCACT
ACCGAAAATAGCGTCTCCGACTCGACGACCGGTGAGATGGAGCTCGTCTGGGCGTACGAC
TTCCGGGACGAGTCGGGCTACCGGCAGAAGGAGGTGCTGTTTTCCCTACAGCCGGTCTAC
ACCAACGGGTGGACCAAAACCGGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAAC
ACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCCAACGGTACCGTCCTG
TCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGATCTGCGGACGCATCTGAGC
CCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGAC
GGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAG
GACGTGTACGGGCAGCTGCTGCACGGCATCCGGTACATCGATCTGCGCGTCGGGTACTAC
AAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGCATATCGCGGCTCCATCCGCTGATC
AACGTGCTCGAGCAGATAAAGCGTTACGCACAGG

consensusID : consensus_1585#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CACCACCTTGCACATTCTAATATAAATTCTCCCGTTTTTTGCTCTCTTTCTCGCCAACAGGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAACACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCGAACGGTACCGTCCTGTCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGGTCTGCGGACGCATCTGAGCCCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGATGGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAGGACGTGTACGGGCAGCTGCTGCACGGCTTCCGGTACATCGATCTGCGCGTCGGGTACTACAAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGTATATCGCGGCTCCATCCGCTGATCAACGTGCTCGAGCAGATCAAGGGTTACGCACAGGAAACGAACGAAATCATCGT]

[+] EMBL CNS09E4M             [CACCACCTTGCACATTCTAATATAAATTCTCCCGTTTTTTGCTCTCTTTCTCGCCAACAGGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAACACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCGAACGGTACCGTCCTGTCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGGTCTGCGGACGCATCTGAGCCCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGATGGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAGGACGTGTACGGGCAGCTGCTGCACGGCTTCCGGTACATCGATCTGCGCGTCGGGTACTACAAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGTATATCGCGGCTCCATCCGCTGATCAACGTGCTCGAGCAGATCAAGGGTTACGCACAGGAAACGAACGAAATCATCGT]




>consensus_1585#1
CACCACCTTGCACATTCTAATATAAATTCTCCCGTTTTTTGCTCTCTTTCTCGCCAACAG
GTATCAAATTTAATTACGATCTCCTGAACAGCGTCAACACCAACACCAGCTGCTACGGGT
ACTACGCGTACTTCGTGCGCCCGAACGGTACCGTCCTGTCGGCGCACTGCATGAAGCTCC
ATCCCCGCTGGATGACCGGTCTGCGGACGCATCTGAGCCCGTTCCGCATGCGGGAGCTGT
TCATACCGGGTACGCACGATTCCGCCTCGTACAAGGATGGGTTCGATCCGCTGCACCAGG
AAACGATCATCACCAAGTACTCGCTGACGCAGGACGAGGACGTGTACGGGCAGCTGCTGC
ACGGCTTCCGGTACATCGATCTGCGCGTCGGGTACTACAAAAACAGTCGCACCCCGTTCT
GGGCGAACCATGGTATATCGCGGCTCCATCCGCTGATCAACGTGCTCGAGCAGATCAAGG
GTTACGCACAGGAAACGAACGAAATCATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1585#0      CCGCCCACGCGTCCGGCGAGCATCGCCCTCAGCTCGCCGGAAGTGACCACCGCTGGCACT 60
consensus_1585#1      ------------------------------------------------------------
                                                                                  

consensus_1585#0      ACCGAAAATAGCGTCTCCGACTCGACGACCGGTGAGATGGAGCTCGTCTGGGCGTACGAC 120
consensus_1585#1      ------------------------------------------------------------
                                                                                  

consensus_1585#0      TTCCGGGACGAGTCGGGCTACCGGCAGAAGGAGGTGCTGTTTTCCCTACAGCCGGTCTAC 180
consensus_1585#1      ------------------CACCACCT--TGCACATTCTAATATAAATTCTCCCGTTTTTT 40
                                         ***  *    * *  * **  * *   * *  *** * *  

consensus_1585#0      ACCAACGGGTGGACCAAAACCGGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAAC 240
consensus_1585#1      GCTCTCTTTCTCGCCAACA--GGTATCAAATTTAATTACGATCTCCTGAACAGCGTCAAC 98
                       *   *       **** *  ***************************************

consensus_1585#0      ACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCCAACGGTACCGTCCTG 300
consensus_1585#1      ACCAACACCAGCTGCTACGGGTACTACGCGTACTTCGTGCGCCCGAACGGTACCGTCCTG 158
                      ******************************************** ***************

consensus_1585#0      TCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGATCTGCGGACGCATCTGAGC 360
consensus_1585#1      TCGGCGCACTGCATGAAGCTCCATCCCCGCTGGATGACCGGTCTGCGGACGCATCTGAGC 218
                      **************************************** *******************

consensus_1585#0      CCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGAC 420
consensus_1585#1      CCGTTCCGCATGCGGGAGCTGTTCATACCGGGTACGCACGATTCCGCCTCGTACAAGGAT 278
                      *********************************************************** 

consensus_1585#0      GGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAG 480
consensus_1585#1      GGGTTCGATCCGCTGCACCAGGAAACGATCATCACCAAGTACTCGCTGACGCAGGACGAG 338
                      ************************************************************

consensus_1585#0      GACGTGTACGGGCAGCTGCTGCACGGCATCCGGTACATCGATCTGCGCGTCGGGTACTAC 540
consensus_1585#1      GACGTGTACGGGCAGCTGCTGCACGGCTTCCGGTACATCGATCTGCGCGTCGGGTACTAC 398
                      *************************** ********************************

consensus_1585#0      AAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGCATATCGCGGCTCCATCCGCTGATC 600
consensus_1585#1      AAAAACAGTCGCACCCCGTTCTGGGCGAACCATGGTATATCGCGGCTCCATCCGCTGATC 458
                      *********************************** ************************

consensus_1585#0      AACGTGCTCGAGCAGATAAAGCGTTACGCACAGG------------------- 634
consensus_1585#1      AACGTGCTCGAGCAGATCAAGGGTTACGCACAGGAAACGAACGAAATCATCGT 511
                      ***************** *** ************