cluster # 159

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Anopheles gambiae
cluster # 159 cluster # 159 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_159#0 length = 797 sequences # 1

consensus_159#1 length = 739 sequences # 1

consensusID : consensus_159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence

                              [ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTAAATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCACATATCTTAGGATTCTGTTTTCTTCGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAAAACAGCTTTGGGGTTTAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAATCATACCGAATTCCATTATTCCTGGTCTGGCAATCGTCAATTCCCGCGTATTACTGGATATGTGCAAATGTATATGCGTTTAAATCCTTTCTTTGCATTGCAGTTTTTACTGGTTCCATCATCAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAAACCTTTGCGGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCACATGAGTAAACCATTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCCTAAGGACTGAAAACATTATTCAAATTTTCAACCGTATGTAACTAACCGGTAAATGTTAGGTTAACGAAGCGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGTTGTGCTGGTCGCGTGCCCTATTGACAGAACCATTTCCATTTGGGGATGCGCCAAAATAGTTCGAATAGTTTAGGATGAGTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCTTTTGCATAATGAAGTTGAGTAAAACACCGGAACA]

[+] EMBL CNS08CFB             [ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTAAATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCACATATCTTAGGATTCTGTTTTCTTCGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAAAACAGCTTTGGGGTTTAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAATCATACCGAATTCCATTATTCCTGGTCTGGCAATCGTCAATTCCCGCGTATTACTGGATATGTGCAAATGTATATGCGTTTAAATCCTTTCTTTGCATTGCAGTTTTTACTGGTTCCATCATCAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAAACCTTTGCGGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCACATGAGTAAACCATTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCCTAAGGACTGAAAACATTATTCAAATTTTCAACCGTATGTAACTAACCGGTAAATGTTAGGTTAACGAAGCGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGTTGTGCTGGTCGCGTGCCCTATTGACAGAACCATTTCCATTTGGGGATGCGCCAAAATAGTTCGAATAGTTTAGGATGAGTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCTTTTGCATAATGAAGTTGAGTAAAACACCGGAACA]




>consensus_159#0
ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTA
AATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCACATATCTTAGGATTCTGTTTTCTT
CGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAAA
ACAGCTTTGGGGTTTAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAATC
ATACCGAATTCCATTATTCCTGGTCTGGCAATCGTCAATTCCCGCGTATTACTGGATATG
TGCAAATGTATATGCGTTTAAATCCTTTCTTTGCATTGCAGTTTTTACTGGTTCCATCAT
CAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAAACCTTTGC
GGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCACATGAGTA
AACCATTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCCTAAGGACTG
AAAACATTATTCAAATTTTCAACCGTATGTAACTAACCGGTAAATGTTAGGTTAACGAAG
CGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGTTGTGCTGGTCGCGTGCCC
TATTGACAGAACCATTTCCATTTGGGGATGCGCCAAAATAGTTCGAATAGTTTAGGATGA
GTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCTTTTGCATAATGAAGTTG
AGTAAAACACCGGAACA

consensusID : consensus_159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence

                              [GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTCTTGATTTGTGCCCTCCGAACGGTTAAGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGCTCCNAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCCGCGTTCAAGGATGTGTACAAACCAGGTGTTCCTCGGCCGGCGTCGACAAGAACACCCNAGTTNCTGGCGCTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGCCGGTGCCACGTGGCTCTGCTTCGTGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGCGGACGCTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACNNTCTGCTCGACTGTCTGAAGANNANGGTCANGTNNGACGGTATCATCGGTTCTGTACCCGTGGATTAAACGTGTTNGTTCAGNGGTATNATCANTNTATTTGTGNGGNCTTANNTTTGGGTTGN]

[+] EMBL CF541756             [GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTCTTGATTTGTGCCCTCCGAACGGTTAAGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGCTCCNAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCCGCGTTCAAGGATGTGTACAAACCAGGTGTTCCTCGGCCGGCGTCGACAAGAACACCCNAGTTNCTGGCGCTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGCCGGTGCCACGTGGCTCTGCTTCGTGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGCGGACGCTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACNNTCTGCTCGACTGTCTGAAGANNANGGTCANGTNNGACGGTATCATCGGTTCTGTACCCGTGGATTAAACGTGTTNGTTCAGNGGTATNATCANTNTATTTGTGNGGNCTTANNTTTGGGTTGN]




>consensus_159#1
GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTCTTGATTTGTGCCCTCCGAACGGTTA
AGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGTCACCAGACC
AGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGC
CGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGCTCCNAG
CTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGT
ATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCG
GTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCCGCGTTCAAG
GATGTGTACAAACCAGGTGTTCCTCGGCCGGCGTCGACAAGAACACCCNAGTTNCTGGCG
CTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGCCGGTGCCACGTGGCTCTGCTTCG
TGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGCGGACGCTGGTCGCGGTGCCGGCG
AGCGTGAGTTCAACNNTCTGCTCGACTGTCTGAAGANNANGGTCANGTNNGACGGTATCA
TCGGTTCTGTACCCGTGGATTAAACGTGTTNGTTCAGNGGTATNATCANTNTATTTGTGN
GGNCTTANNTTTGGGTTGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_159#0      ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTA 60
consensus_159#1      --GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTC---TTGATTTGTGCCCT---CCG 52
                       *    *    ** **    *  * * *    * **     ** *  ** ***      

consensus_159#0      AATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCA-CATATCTTAGGATTCTGTTTTCT 119
consensus_159#1      AACG-GTTAAGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGT 111
                     ** * ***          *** * *   *    *     * *****   **        *

consensus_159#0      TCGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAA 179
consensus_159#1      CACCAGACCAGATCCATCGAAAATGACCAAGAAGGC-TGATCCCTATGGCTTCGCCAAGG 170
                        **   *** *  *  *** *    * *  * **  *** * ***   *   *     

consensus_159#0      AACAGCTTTGGGGTT-TAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAA 238
consensus_159#1      ATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAAC--GGCCGTAGCACCGATCGA 228
                     *    **    ***  ** ** ***  *       * *         *      *    *

consensus_159#0      TCATACCGAATTCCATTATTCCTGGTCT-GGCAATCGTCAATTCCCGCGTATTACTGGAT 297
consensus_159#1      ACGCGCTCCNAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAG 288
                      *   *      *   *  *** ****  ***   *  ***      **   *     * 

consensus_159#0      ATGTGCAAATGTAT-ATGCGTTTAAATCCTTTCT--TTGCATTGCAGTTTTTACT-GGTT 353
consensus_159#1      CAGTACAAGGGTATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTG 348
                       ** ***  ****  * ** **   ** ** *   *  *   * **     * * *** 

consensus_159#0      CCATC-ATCAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAA 412
consensus_159#1      CCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCC---AGGCCCTGA 405
                     ** **   *    ** **     * *    *   **  ** ***        *      *

consensus_159#0      ACCTTTGCGGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCA 472
consensus_159#1      ACTTCCGCGTTCAAG-GATGTGTACAAACCAGGTGTTC---CTCGGCCGGCGTCG----A 457
                     ** *  ***  * ** ***   ** **    * **       **  *  ** **     *

consensus_159#0      CATGAGTAAACCA-TTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCC 531
consensus_159#1      CAAGAACACCCNAGTTNCTGGCGCTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGC 517
                     ** **  *  * * **  *   *   * * * * *      *   **   *  *  *  *

consensus_159#0      TAAGGACTGAAAACATTA-TTCAAATTTTCAACCGTATGTAACTA-ACCGGTAAATGTTA 589
consensus_159#1      CGGTGCCACGTGGCTCTGCTTCGTGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGC 577
                         * *      *  *  ***   *   *   **  *    *   *** **    **  

consensus_159#0      GGTTAACGAAGCGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGT-TGTGCT 648
consensus_159#1      GGACGCTGGTCGCGGTGCCGGCGAGCGTGAGTT---CAACNNTCTGCTCGACTGTCTGAA 634
                     **     *     *  **    ** * *   **   ***   * *  * ** * * **  

consensus_159#0      GGTCGCGTGCCCTATTGACAGAACCATT-----TCCATTTGGGGATGCGCCAAAATAGTT 703
consensus_159#1      GANNANGGTCANGTNNGACGGTATCATCGGTTCTGTACCCGTGGATTAAACGTGTTNGTT 694
                     *     *  *      *** * * ***      *  *   * ****    *    * ***

consensus_159#0      CGAATAGTTTAGGATGAGTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCT 763
consensus_159#1      CAGNGGTATNATCANTNTATTTGTGNGGNCTTANNTTTGG-GTTGN-------------- 739
                     *       * *  *     *** **     *    ****  ****               

consensus_159#0      TTTGCATAATGAAGTTGAGTAAAACACCGGAACA 797
consensus_159#1      ----------------------------------