cluster # 1604

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Anopheles gambiae
cluster # 1604 cluster # 1604 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1604#0 length = 609 sequences # 1

consensus_1604#1 length = 553 sequences # 1

consensusID : consensus_1604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [ATCCCNAGTTTGTTGCTGGACTGGTGCGTCTTTTGTCTCTGTGTTTTTCCGTAGTTTGGTGATGTGTTGTATGTAAATTGTCGACTCGGTCGGGTTCGGATTTGCTAGGGTAGGACCGTTTTTCCGCAAGTGCAAAACGCTCATATGGCCGAACGAGTCGCGATTAGCCCAAATGTCCCTGTTGTACCCAGTGCGGACGCCCATCCGTACGCACTAAAAGCGTATACGAGAGCGCGAGACGACGACGTGAAAAGCGCGGAGAAGATTTGTGGTGGCGTATTTCGTGGTGCGTTTCGCTTCGTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCCCGAAGAAGAAACGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTTTGTACGTCGTGTCGTGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCCTTATCGGAGATCCCGTGGGCCGTGTGTATCGTGACACCGCGAATGTGTGTCGTCGGCCTGCTAGGATGGAACAGTTTTCAGCACGATCTGACGTTTGGCGCTGGAAGGAAACCGTCTCGANCACAGAGCAAAGTGGGTGGGGTNGTGGGC]

[+] EMBL AL692985             [ATCCCNAGTTTGTTGCTGGACTGGTGCGTCTTTTGTCTCTGTGTTTTTCCGTAGTTTGGTGATGTGTTGTATGTAAATTGTCGACTCGGTCGGGTTCGGATTTGCTAGGGTAGGACCGTTTTTCCGCAAGTGCAAAACGCTCATATGGCCGAACGAGTCGCGATTAGCCCAAATGTCCCTGTTGTACCCAGTGCGGACGCCCATCCGTACGCACTAAAAGCGTATACGAGAGCGCGAGACGACGACGTGAAAAGCGCGGAGAAGATTTGTGGTGGCGTATTTCGTGGTGCGTTTCGCTTCGTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCCCGAAGAAGAAACGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTTTGTACGTCGTGTCGTGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCCTTATCGGAGATCCCGTGGGCCGTGTGTATCGTGACACCGCGAATGTGTGTCGTCGGCCTGCTAGGATGGAACAGTTTTCAGCACGATCTGACGTTTGGCGCTGGAAGGAAACCGTCTCGANCACAGAGCAAAGTGGGTGGGGTNGTGGGC]




>consensus_1604#0
ATCCCNAGTTTGTTGCTGGACTGGTGCGTCTTTTGTCTCTGTGTTTTTCCGTAGTTTGGT
GATGTGTTGTATGTAAATTGTCGACTCGGTCGGGTTCGGATTTGCTAGGGTAGGACCGTT
TTTCCGCAAGTGCAAAACGCTCATATGGCCGAACGAGTCGCGATTAGCCCAAATGTCCCT
GTTGTACCCAGTGCGGACGCCCATCCGTACGCACTAAAAGCGTATACGAGAGCGCGAGAC
GACGACGTGAAAAGCGCGGAGAAGATTTGTGGTGGCGTATTTCGTGGTGCGTTTCGCTTC
GTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCCCGAAGAAGAAA
CGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTTTGTACGTCGTGTCG
TGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCCTTATCGGAGATCCCGTGGGCC
GTGTGTATCGTGACACCGCGAATGTGTGTCGTCGGCCTGCTAGGATGGAACAGTTTTCAG
CACGATCTGACGTTTGGCGCTGGAAGGAAACCGTCTCGANCACAGAGCAAAGTGGGTGGG
GTNGTGGGC

consensusID : consensus_1604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [CCGCCCACGCGTCCGCGTAGTTTCGTGGTGCGTTTCGCTTCGTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCCGAAGAAGAAACGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTTGTCGTCGTGTTCGTTTGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCCCTTATCGGCAGATCCCGTGGGCCGTGTGTATCGTGACACGCGAATGTGTGTCGTCGCCTGCTAGGATGGAACAGTTTTCGCACGATCTGACGTTGGCGCTGGAGGAAACGTCTCGCACCACCACGAGCAAAGTGCGGTGGGGTGTGCGCCGCCGGACACGATCAACGGGAAATTTGCCTTGTGCACCACAGCCAACGGAGGATAGTTCCAGCAGCCCCACGGATCCACCGGCATGCAATGTAGTGATGAACCACGAGGACTCGCCCTACCTGAGTGGCAGCAACAACATCGTCCAGAGCGACTCCGATGATCGACATTCCGTGGCGTTTACGTTCAAGTTGCGCCAAACGCCA]

[+] EMBL BM603425             [CCGCCCACGCGTCCGCGTAGTTTCGTGGTGCGTTTCGCTTCGTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCCGAAGAAGAAACGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTTGTCGTCGTGTTCGTTTGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCCCTTATCGGCAGATCCCGTGGGCCGTGTGTATCGTGACACGCGAATGTGTGTCGTCGCCTGCTAGGATGGAACAGTTTTCGCACGATCTGACGTTGGCGCTGGAGGAAACGTCTCGCACCACCACGAGCAAAGTGCGGTGGGGTGTGCGCCGCCGGACACGATCAACGGGAAATTTGCCTTGTGCACCACAGCCAACGGAGGATAGTTCCAGCAGCCCCACGGATCCACCGGCATGCAATGTAGTGATGAACCACGAGGACTCGCCCTACCTGAGTGGCAGCAACAACATCGTCCAGAGCGACTCCGATGATCGACATTCCGTGGCGTTTACGTTCAAGTTGCGCCAAACGCCA]




>consensus_1604#1
CCGCCCACGCGTCCGCGTAGTTTCGTGGTGCGTTTCGCTTCGTTCTACCCCGGATACCTG
AACATTGCTGAACATTTGCTGAGCGTATCCGAAGAAGAAACGAAGGACCATAGTTAGAGC
ACACTCGTCCGACCGTCGTCGTCGTTGTCGTCGTGTTCGTTTGTGACACGTTCACGCGGG
AGAAGGGAGTAGCGGCGGCCCTTATCGGCAGATCCCGTGGGCCGTGTGTATCGTGACACG
CGAATGTGTGTCGTCGCCTGCTAGGATGGAACAGTTTTCGCACGATCTGACGTTGGCGCT
GGAGGAAACGTCTCGCACCACCACGAGCAAAGTGCGGTGGGGTGTGCGCCGCCGGACACG
ATCAACGGGAAATTTGCCTTGTGCACCACAGCCAACGGAGGATAGTTCCAGCAGCCCCAC
GGATCCACCGGCATGCAATGTAGTGATGAACCACGAGGACTCGCCCTACCTGAGTGGCAG
CAACAACATCGTCCAGAGCGACTCCGATGATCGACATTCCGTGGCGTTTACGTTCAAGTT
GCGCCAAACGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1604#0      ATCCCNAGTTTGTTGCTGGACTGGTGCGTCTTTTGTCTCTGTGTTTTTCCGTAGTTTGGT 60
consensus_1604#1      ------------------------------------------------------------
                                                                                  

consensus_1604#0      GATGTGTTGTATGTAAATTGTCGACTCGGTCGGGTTCGGATTTGCTAGGGTAGGACCGTT 120
consensus_1604#1      ------------------------------------------------------------
                                                                                  

consensus_1604#0      TTTCCGCAAGTGCAAAACGCTCATATGGCCGAACGAGTCGCGATTAGCCCAAATGTCCCT 180
consensus_1604#1      ------------------------------------------------------------
                                                                                  

consensus_1604#0      GTTGTACCCAGTGCGGACGCCCATCCGTACGCACTAAAAGCGTATACGAGAGCGCGAGAC 240
consensus_1604#1      ------------------------------------------------------------
                                                                                  

consensus_1604#0      GACGACGTGAAAAGCGCGGAGAAGATTTGTGGTGGCGTA-TTTCGTGGTGCGTTTCGCTT 299
consensus_1604#1      --------------------CCGCCCACGCGTCCGCGTAGTTTCGTGGTGCGTTTCGCTT 40
                                                  * *   ***** ********************

consensus_1604#0      CGTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCCCGAAGAAGAA 359
consensus_1604#1      CGTTCTACCCCGGATACCTGAACATTGCTGAACATTTGCTGAGCGTATCC-GAAGAAGAA 99
                      ************************************************** *********

consensus_1604#0      ACGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTTTGTACGTCGTGTC 419
consensus_1604#1      ACGAAGGACCATAGTTAGAGCACACTCGTCCGACCGTCGTCGTCGTT-GT-CGTCGTGTT 157
                      *********************************************** ** ******** 

consensus_1604#0      G---TGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCC-TTATCGG-AGATCCCG 474
consensus_1604#1      CGTTTGTGACACGTTCACGCGGGAGAAGGGAGTAGCGGCGGCCCTTATCGGCAGATCCCG 217
                          *************************************** ******* ********

consensus_1604#0      TGGGCCGTGTGTATCGTGACACCGCGAATGTGTGTCGTCGGCCTGCTAGGATGGAACAGT 534
consensus_1604#1      TGGGCCGTGTGTATCGTGACAC-GCGAATGTGTGTCGTCG-CCTGCTAGGATGGAACAGT 275
                      ********************** ***************** *******************

consensus_1604#0      TTTCAGCACGATCTGACGTTTGGCGCTGGAAGGAAACCGTCTCG-ANCACA--GAGCAAA 591
consensus_1604#1      TTTC-GCACGATCTGACGTT-GGCGCTGGAGGAAA--CGTCTCGCACCACCACGAGCAAA 331
                      **** *************** ********* * **  ******* * ***   *******

consensus_1604#0      GTGGGTGGGGTNGTGGGC------------------------------------------ 609
consensus_1604#1      GTGCGGTGGGGTGTGCGCCGCCGGACACGATCAACGGGAAATTTGCCTTGTGCACCACAG 391
                      *** *  ***  *** **                                          

consensus_1604#0      ------------------------------------------------------------
consensus_1604#1      CCAACGGAGGATAGTTCCAGCAGCCCCACGGATCCACCGGCATGCAATGTAGTGATGAAC 451
                                                                                  

consensus_1604#0      ------------------------------------------------------------
consensus_1604#1      CACGAGGACTCGCCCTACCTGAGTGGCAGCAACAACATCGTCCAGAGCGACTCCGATGAT 511
                                                                                  

consensus_1604#0      ------------------------------------------
consensus_1604#1      CGACATTCCGTGGCGTTTACGTTCAAGTTGCGCCAAACGCCA 553