cluster # 1611

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Anopheles gambiae
cluster # 1611 cluster # 1611 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1611#0 length = 708 sequences # 1

consensus_1611#1 length = 686 sequences # 1

consensusID : consensus_1611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [CCGGTCCCGTATCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATGTGTGATAAGGTAACGACGTACCAGCCGTGTACCGTGTGATATCAGTGCAAATGTTAGTGATACCATGTGCTGCTAAAGAGTCCGTTTCTCACGCGTTCGTTCGGATGTTGGCAGCGCGTTCGCCTCAATTACAGGCAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATTGGCGGAGGGAAAGAAGAAACAGACAAAATGACATCTGACGAAAGCGAAAATGCTGGAGCAGATGCTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCCTTTCAGCGCCGGTACAACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTGTTGCTCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATGCTCAACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGTCGTGGAGAATATGTACCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACCACTGACGACTATACGCCACCATCGAACAAAACAGCGACAGTATCCTGTCTGTATGGATACGACTACGATCGCACCTACTACGATCGTACACCGGTGACGGAGCAGGATTGGG]

[+] EMBL BM607919             [CCGGTCCCGTATCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATGTGTGATAAGGTAACGACGTACCAGCCGTGTACCGTGTGATATCAGTGCAAATGTTAGTGATACCATGTGCTGCTAAAGAGTCCGTTTCTCACGCGTTCGTTCGGATGTTGGCAGCGCGTTCGCCTCAATTACAGGCAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATTGGCGGAGGGAAAGAAGAAACAGACAAAATGACATCTGACGAAAGCGAAAATGCTGGAGCAGATGCTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCCTTTCAGCGCCGGTACAACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTGTTGCTCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATGCTCAACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGTCGTGGAGAATATGTACCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACCACTGACGACTATACGCCACCATCGAACAAAACAGCGACAGTATCCTGTCTGTATGGATACGACTACGATCGCACCTACTACGATCGTACACCGGTGACGGAGCAGGATTGGG]




>consensus_1611#0
CCGGTCCCGTATCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGAT
GTGTGATAAGGTAACGACGTACCAGCCGTGTACCGTGTGATATCAGTGCAAATGTTAGTG
ATACCATGTGCTGCTAAAGAGTCCGTTTCTCACGCGTTCGTTCGGATGTTGGCAGCGCGT
TCGCCTCAATTACAGGCAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATTGGCG
GAGGGAAAGAAGAAACAGACAAAATGACATCTGACGAAAGCGAAAATGCTGGAGCAGATG
CTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCCTTTCAGCGCCGGTACA
ACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTGTTGC
TCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATGCTCA
ACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGTCGTG
GAGAATATGTACCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACCACTG
ACGACTATACGCCACCATCGAACAAAACAGCGACAGTATCCTGTCTGTATGGATACGACT
ACGATCGCACCTACTACGATCGTACACCGGTGACGGAGCAGGATTGGG

consensusID : consensus_1611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGCTCGCTCACACCCAAACGGTTACAGATGTTACAACTACAGGTTTCGGTGCGAGCGTCTCTCAATCGGGTGACGTCTTTTTACTGAATGCATAGACGGCGACAACAACGTCCCACGATGACAGCGTACCAGAGGAGCTGACACTGCAGTCCGACCCTCGGGGGAGACAGTCCCGTATCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATGTGTGATAAGCGCGTTCGTCTCAATTACAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATTGGCGGAGGGAAAGAAGAAACAGACAAAATGACATCTGACGCAAGCGAAAATGCTGGAGCAGATGCTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCGTTTCAGCGCCGGTACAACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTGTTGCTCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATGCTCAACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGTCGTGGAGAATATGTGCCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACCACTGACGACTATATGCCACCATCGAACAAAAC]

[+] EMBL BM643398             [CCGCTCGCTCACACCCAAACGGTTACAGATGTTACAACTACAGGTTTCGGTGCGAGCGTCTCTCAATCGGGTGACGTCTTTTTACTGAATGCATAGACGGCGACAACAACGTCCCACGATGACAGCGTACCAGAGGAGCTGACACTGCAGTCCGACCCTCGGGGGAGACAGTCCCGTATCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATGTGTGATAAGCGCGTTCGTCTCAATTACAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATTGGCGGAGGGAAAGAAGAAACAGACAAAATGACATCTGACGCAAGCGAAAATGCTGGAGCAGATGCTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCGTTTCAGCGCCGGTACAACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTGTTGCTCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATGCTCAACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGTCGTGGAGAATATGTGCCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACCACTGACGACTATATGCCACCATCGAACAAAAC]




>consensus_1611#1
CCGCTCGCTCACACCCAAACGGTTACAGATGTTACAACTACAGGTTTCGGTGCGAGCGTC
TCTCAATCGGGTGACGTCTTTTTACTGAATGCATAGACGGCGACAACAACGTCCCACGAT
GACAGCGTACCAGAGGAGCTGACACTGCAGTCCGACCCTCGGGGGAGACAGTCCCGTATC
CCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATGTGTGATAAGCGC
GTTCGTCTCAATTACAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATTGGCGGA
GGGAAAGAAGAAACAGACAAAATGACATCTGACGCAAGCGAAAATGCTGGAGCAGATGCT
GCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCGTTTCAGCGCCGGTACAAC
ATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTGTTGCTC
GTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATGCTCAAC
GCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGTCGTGGA
GAATATGTGCCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACCACTGAC
GACTATATGCCACCATCGAACAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1611#0      ----------------------------------------------CCGGTCC---CGTA 11
consensus_1611#1      CCGCTCGCTCACACCCAAACGGTTACAGATGTTACAACTACAGGTTTCGGTGCGAGCGTC 60
                                                                     **** *   *** 

consensus_1611#0      TCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATG-TGTGATAAG 70
consensus_1611#1      TCTCA-ATCGGGTGACGTCTTTTTACTGAA-TGCATAGACGGCGACAACAACGTCCCACG 118
                      ** *  ***  * ***    **   *   * *    *** *   *  *    **   * *

consensus_1611#0      GTAACGACGTACCAGCCGTGT--ACCGTGTGATATCAGTGCAAATGTTAGTGATACCATG 128
consensus_1611#1      ATGACAGCGTACCAGAGGAGCTGACACTGCAGTCCGACCCTCGGGGGAGACAGTCCCGTA 178
                       * **  ********  * *   **  **   *   *        *       * ** * 

consensus_1611#0      TGCTGC-TAAAGAGTCCGTTTCTCACGCGTTCGTTCGGATGTTGGC-----------AGC 176
consensus_1611#1      TCCCGTATCTAGCGACAGGCTTGCGCGAGACTAGCCAGAAGTTAATGATGTGTGATAAGC 238
                      * * *  *  ** * * *  *  * ** *      * ** ***              ***

consensus_1611#0      GCGTTCGCCTCAATTACAGGCAGATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATT 236
consensus_1611#1      GCGTTCGTCTCAATTACAG----ATCTCGATCTTGCTCACGGATCTCGGTGTACGGCATT 294
                      ******* ***********    *************************************

consensus_1611#0      GGCGGAGGGAAAGAAGAAACAGACAAAATGACATCTGACGAAAGCGAAAATGCTGGAGCA 296
consensus_1611#1      GGCGGAGGGAAAGAAGAAACAGACAAAATGACATCTGACGCAAGCGAAAATGCTGGAGCA 354
                      **************************************** *******************

consensus_1611#0      GATGCTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCCTTTCAGCGCCGG 356
consensus_1611#1      GATGCTGCGTTCGATCGGATCATGGAATCAATCGGCAACGATGGTCCGTTTCAGCGCCGG 414
                      *********************************************** ************

consensus_1611#0      TACAACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTG 416
consensus_1611#1      TACAACATCATCTTTAACGTGATCGCGGTACTGTTTTTCGCGATGTGTGTGGTGAATGTG 474
                      ************************************************************

consensus_1611#0      TTGCTCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATG 476
consensus_1611#1      TTGCTCGTGCTGGCCGTCCCGGACCACAGGTGCCGTATACCGGTCACGGACAACGAAATG 534
                      ************************************************************

consensus_1611#0      CTCAACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGT 536
consensus_1611#1      CTCAACGCTACGGGCAGCGATCAGTGGAATGGAACTGTGTATCCAATGGAGTATAACAGT 594
                      ************************************************************

consensus_1611#0      CGTGGAGAATATGTACCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACC 596
consensus_1611#1      CGTGGAGAATATGTGCCCAGTTCCTGCGAGATGTACAACATTTCTTATGATGAGCATACC 654
                      ************** *********************************************

consensus_1611#0      ACTGACGACTATACGCCACCATCGAACAAAACAGCGACAGTATCCTGTCTGTATGGATAC 656
consensus_1611#1      ACTGACGACTATATGCCACCATCGAACAAAAC---------------------------- 686
                      ************* ******************                            

consensus_1611#0      GACTACGATCGCACCTACTACGATCGTACACCGGTGACGGAGCAGGATTGGG 708
consensus_1611#1      ----------------------------------------------------