cluster # 1624

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Anopheles gambiae
cluster # 1624 cluster # 1624 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1624#0 length = 579 sequences # 1

consensus_1624#1 length = 313 sequences # 1

consensusID : consensus_1624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTATTGGTTGCCGTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAGGATAGAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATTCTGTGGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTCGCGCTTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTGGTGCCAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCAACACACCACACTACACACACANAACTACACAGAGTAATGTCAA]

[+] EMBL AL693083             [CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTATTGGTTGCCGTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAGGATAGAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATTCTGTGGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTCGCGCTTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTGGTGCCAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCAACACACCACACTACACACACANAACTACACAGAGTAATGTCAA]




>consensus_1624#0
CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTCATATCGCTCATGCTAT
TCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAG
CAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGT
GTAAGAAACCCTGGAAAGATGTTAACGTGTTTATTGGTTGCCGTTGAGTCTGGAAAATTT
ATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAGGATA
GAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATTCTGT
GGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTCGCGC
TTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTGGTGC
CAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCAACAC
ACCACACTACACACACANAACTACACAGAGTAATGTCAA

consensusID : consensus_1624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGGAAGTTTTATTGGTGAAGGATAGAGAGCGGGAAGG]

[+] EMBL BX613098             [CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGGAAGTTTTATTGGTGAAGGATAGAGAGCGGGAAGG]




>consensus_1624#1
CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTAT
TCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAG
CAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGT
GTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAAA
TTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGGAAGTTTTATTGGTGAAGGATA
GAGAGCGGGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1624#0      CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTC-ATATCGCTCATGCTA 59
consensus_1624#1      -CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTA 59
                          ** *  * *    ******************** ****** ***************

consensus_1624#0      TTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACA 119
consensus_1624#1      TTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACA 119
                      ************************************************************

consensus_1624#0      GCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACG 179
consensus_1624#1      GCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACG 179
                      ************************************************************

consensus_1624#0      TGTAAGAAACCCTGGAAAGATGTTAACGTGTTT-ATTGGTTGC--CGTTGAGTCTGGAAA 236
consensus_1624#1      TGTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAA 239
                      ********************************* *********    *************

consensus_1624#0      ATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAG 296
consensus_1624#1      ATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTA--GGAAGTTTTATTGG-TGAAG 296
                      **************************************  * * ********** *****

consensus_1624#0      GATAGAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATT 356
consensus_1624#1      GATAGAGAGCGGGAAGG------------------------------------------- 313
                      *************** *                                           

consensus_1624#0      CTGTGGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTC 416
consensus_1624#1      ------------------------------------------------------------
                                                                                  

consensus_1624#0      GCGCTTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTG 476
consensus_1624#1      ------------------------------------------------------------
                                                                                  

consensus_1624#0      GTGCCAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCA 536
consensus_1624#1      ------------------------------------------------------------
                                                                                  

consensus_1624#0      ACACACCACACTACACACACANAACTACACAGAGTAATGTCAA 579
consensus_1624#1      -------------------------------------------