cluster # 1636

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Anopheles gambiae
cluster # 1636 cluster # 1636 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1636#0 length = 616 sequences # 1

consensus_1636#1 length = 349 sequences # 1

consensusID : consensus_1636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [GCAACTACTCCTTCCCGGAACCTGGCGAGCAACGAAGAGGAGCACCGTCAGTCTTCTGCCCTGTCCGAGCATTTGGTGCACCATTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAATTGAAGACTTGGATGCCCATCTGCCCGATCAGCATCCAGCGTCGGGCATGTTTTCGTTTCCGAGCGACGCGCTTGCCAGCATGACGACGGCGGCGGCAAGCGCACCCTACCGGCAGACGGCGAAAGCACCGCACGATGCGGGCGGCGCACCGATGCGGCGGGGTCGCTCCCGGGGCGGCCGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCAGCACGAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTCGGCCGCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGCCCGCTCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTACCAGCCGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAACGGTTTCGCGGGTACGCTCT]

[+] EMBL BX623065             [GCAACTACTCCTTCCCGGAACCTGGCGAGCAACGAAGAGGAGCACCGTCAGTCTTCTGCCCTGTCCGAGCATTTGGTGCACCATTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAATTGAAGACTTGGATGCCCATCTGCCCGATCAGCATCCAGCGTCGGGCATGTTTTCGTTTCCGAGCGACGCGCTTGCCAGCATGACGACGGCGGCGGCAAGCGCACCCTACCGGCAGACGGCGAAAGCACCGCACGATGCGGGCGGCGCACCGATGCGGCGGGGTCGCTCCCGGGGCGGCCGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCAGCACGAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTCGGCCGCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGCCCGCTCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTACCAGCCGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAACGGTTTCGCGGGTACGCTCT]




>consensus_1636#0
GCAACTACTCCTTCCCGGAACCTGGCGAGCAACGAAGAGGAGCACCGTCAGTCTTCTGCC
CTGTCCGAGCATTTGGTGCACCATTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTA
ATTGAAGACTTGGATGCCCATCTGCCCGATCAGCATCCAGCGTCGGGCATGTTTTCGTTT
CCGAGCGACGCGCTTGCCAGCATGACGACGGCGGCGGCAAGCGCACCCTACCGGCAGACG
GCGAAAGCACCGCACGATGCGGGCGGCGCACCGATGCGGCGGGGTCGCTCCCGGGGCGGC
CGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCAGCAC
GAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTCGGCC
GCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGCCCGC
TCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTACCAGC
CGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAACGGT
TTCGCGGGTACGCTCT

consensusID : consensus_1636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTCCTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGAGCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAAGATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTATCCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGACGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG]

[+] EMBL BX469200             [GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTCCTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGAGCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAAGATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTATCCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGACGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG]




>consensus_1636#1
GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTC
CTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGA
GCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAA
GATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTAT
CCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGA
CGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1636#0      --------------------------------------------------GCAACTACTC 10
consensus_1636#1      GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTC 60
                                                                        **********

consensus_1636#0      CTTCCCGGAACCTGGC-GAGCAACGAAGAGGAGCACCG-TCAGTCTTCTGCCCTGTCCGA 68
consensus_1636#1      CTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGA 120
                      **************** ********************* *********************

consensus_1636#0      GCATTTGGTGCACCA-TTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAA-TTGAA 126
consensus_1636#1      GCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAA 180
                      **** ********** ************************************** *****

consensus_1636#0      GACTTGGATGCCCATC-TGCCCGATCAGCATCCA-GCGTCGGGCATGTTTTCGTT----T 180
consensus_1636#1      GATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTAT 240
                      ** ************* ************  * * ************* ** **     *

consensus_1636#0      CCGAGCGACGCGC-TTGCCAGCATGACGACGGC-GGCGGCAAGCGCACCCTACCGGCAGA 238
consensus_1636#1      CCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGA 300
                      ************* ***** ************* **************************

consensus_1636#0      CGGCGAAAGCACCGCACGA-TGCGGGCGGCGCACCGATG-CGGCGGGGTCGCTCCCGGGG 296
consensus_1636#1      CGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG----------- 349
                      **** ********* **** ******************* ********            

consensus_1636#0      CGGCCGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCA 356
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      GCACGAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTC 416
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      GGCCGCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGC 476
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      CCGCTCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTAC 536
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      CAGCCGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAA 596
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      CGGTTTCGCGGGTACGCTCT 616
consensus_1636#1      --------------------