cluster # 1649

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Anopheles gambiae
cluster # 1649 cluster # 1649 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1649#0 length = 804 sequences # 1

consensus_1649#1 length = 614 sequences # 1

consensusID : consensus_1649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 804
fasta sequence

                              [CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAATGATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAAGTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCGAATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATTTAATTACTCGGGCCAGTTAGGCACGCAGGTACCGCGTTGTACCGTCCGTGGCATCGACAAGTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTACCATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAACNGGGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTAAAGGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTATATATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAGNCGCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAAACTTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCAAATGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAAAAAAATACTTAATGCATCCACACAAA]

[+] EMBL AL693236             [CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAATGATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAAGTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCGAATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATTTAATTACTCGGGCCAGTTAGGCACGCAGGTACCGCGTTGTACCGTCCGTGGCATCGACAAGTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTACCATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAACNGGGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTAAAGGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTATATATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAGNCGCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAAACTTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCAAATGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAAAAAAATACTTAATGCATCCACACAAA]




>consensus_1649#0
CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAAT
GATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAA
GTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCG
AATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATT
TAATTACTCGGGCCAGTTAGGCACGCAGGTACCGCGTTGTACCGTCCGTGGCATCGACAA
GTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTACC
ATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAACNG
GGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTAAA
GGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTATAT
ATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAGNC
GCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAAAC
TTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCAAA
TGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAAAA
AAATACTTAATGCATCCACACAAA

consensusID : consensus_1649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [GCCTGCGGGCGGCAGTGTGTTTTGNTTACTTAAGGATGCGGCCGAACGAACGGACCTGAGGTGGAGAAGATTTACACGCACGCTGGTCCGAATTTTACCACCCCTCCCCACGCAGTATGGTGATCACACAACATCACCATATGTATTTAATTCTCGGGCCAGGTTAGGCACGCAGGTACCGCCGTTGTCCGTCCGTGGCATCGACAAGTTTCAGCAATACTGAACCCTTATTTGAGACACAGGCACGGAAAAGGTTACATTAGGACAGGCCGAAGAACGGTCTAAACATCGATTGCATGCCAAACGGGTACAGCAGGGTGGTAGGTTATCGGTACGGGGTACACATAAGCAGCAGAACAGAAGCTACTTACAAGCGTATTGGATTTTATAGGCAAGACAATGTAAGTGCGNCCATTTTTCAGGCGATCGCNCCCTATCTTTAGAATGTTTAAAGGCCATATTTTNACNATTTTGCTTCCATTCCAACGTCGAACGTGCTTCTACGATCGTATAGCAATGCTACGAAGANCNAATCTGTATTGGACTATCTGGCNCTTTTCCCGTCAACAAAATACTTTTGCTCCACCAAAACCCAGCCGTGTGACACCATTANG]

[+] EMBL BX620315             [GCCTGCGGGCGGCAGTGTGTTTTGNTTACTTAAGGATGCGGCCGAACGAACGGACCTGAGGTGGAGAAGATTTACACGCACGCTGGTCCGAATTTTACCACCCCTCCCCACGCAGTATGGTGATCACACAACATCACCATATGTATTTAATTCTCGGGCCAGGTTAGGCACGCAGGTACCGCCGTTGTCCGTCCGTGGCATCGACAAGTTTCAGCAATACTGAACCCTTATTTGAGACACAGGCACGGAAAAGGTTACATTAGGACAGGCCGAAGAACGGTCTAAACATCGATTGCATGCCAAACGGGTACAGCAGGGTGGTAGGTTATCGGTACGGGGTACACATAAGCAGCAGAACAGAAGCTACTTACAAGCGTATTGGATTTTATAGGCAAGACAATGTAAGTGCGNCCATTTTTCAGGCGATCGCNCCCTATCTTTAGAATGTTTAAAGGCCATATTTTNACNATTTTGCTTCCATTCCAACGTCGAACGTGCTTCTACGATCGTATAGCAATGCTACGAAGANCNAATCTGTATTGGACTATCTGGCNCTTTTCCCGTCAACAAAATACTTTTGCTCCACCAAAACCCAGCCGTGTGACACCATTANG]




>consensus_1649#1
GCCTGCGGGCGGCAGTGTGTTTTGNTTACTTAAGGATGCGGCCGAACGAACGGACCTGAG
GTGGAGAAGATTTACACGCACGCTGGTCCGAATTTTACCACCCCTCCCCACGCAGTATGG
TGATCACACAACATCACCATATGTATTTAATTCTCGGGCCAGGTTAGGCACGCAGGTACC
GCCGTTGTCCGTCCGTGGCATCGACAAGTTTCAGCAATACTGAACCCTTATTTGAGACAC
AGGCACGGAAAAGGTTACATTAGGACAGGCCGAAGAACGGTCTAAACATCGATTGCATGC
CAAACGGGTACAGCAGGGTGGTAGGTTATCGGTACGGGGTACACATAAGCAGCAGAACAG
AAGCTACTTACAAGCGTATTGGATTTTATAGGCAAGACAATGTAAGTGCGNCCATTTTTC
AGGCGATCGCNCCCTATCTTTAGAATGTTTAAAGGCCATATTTTNACNATTTTGCTTCCA
TTCCAACGTCGAACGTGCTTCTACGATCGTATAGCAATGCTACGAAGANCNAATCTGTAT
TGGACTATCTGGCNCTTTTCCCGTCAACAAAATACTTTTGCTCCACCAAAACCCAGCCGT
GTGACACCATTANG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1649#0      CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAAT 60
consensus_1649#1      ------------------------------------------------------------
                                                                                  

consensus_1649#0      GATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAA 120
consensus_1649#1      --------------------------GCCTGCGGGCGGCAGTGTGTTTT-GNTTACTTAA 33
                                                *********************** * ********

consensus_1649#0      GTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCG 180
consensus_1649#1      G-GATGCGGCCGAACGAACGGACCTGAG-GTGGAGAAGATTTACACGCACGCTG-GTCCG 90
                      * ************************** ************************* *****

consensus_1649#0      AATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATT 240
consensus_1649#1      AATTTTACCACCCCT-CCCCACG-CAGTATG-GTGATCACACAACATCACCATATGTATT 147
                      *********** *** ******* ******* ****************************

consensus_1649#0      TAATTACTCGGGCCAG-TTAGGCACGCAGGTACCGC-GTTGTACCGTCCGTGGCATCGAC 298
consensus_1649#1      TAATT-CTCGGGCCAGGTTAGGCACGCAGGTACCGCCGTTGT-CCGTCCGTGGCATCGAC 205
                      ***** ********** ******************* ***** *****************

consensus_1649#0      AAGTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTA 358
consensus_1649#1      AAGTTTCAGCAA-TA--CTGAACCC---TTATTTGAGACACAGGCACGGAAAA--GGTTA 257
                      ********** * **   *******   ** *  *  ************** *  *****

consensus_1649#0      CCATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAAC 418
consensus_1649#1      C-ATTAGG-ACAG-----GCCGAAGAACGGTCTAAAC-ATCG-ATTGC--ATGCC-AAAC 305
                      * ****** ****     **     *  ****** ** **** *****   **** ****

consensus_1649#0      NGGGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTA 478
consensus_1649#1      GGG----------------TACAGCAGGGTGGTAGGTTATCGGTACGGGGTACAC--ATA 347
                       **                * *   *** *  *  ** * **   ** * * ***   **

consensus_1649#0      AAGGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTAT 538
consensus_1649#1      AGCAGCAGAACAG----------AAGCTACTTACAAG---------CGTATTGGATTT-T 387
                      *    *******            *****  ** **          * *** * **** *

consensus_1649#0      ATATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAG 598
consensus_1649#1      ATA----GGC-----AAGACA---ATGT----AAGTGCGNCC---------ATTTTTCAG 422
                      ***    ***      *****   ****    *  ****  *           *    **

consensus_1649#0      NCGCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAA 658
consensus_1649#1      GCG-ATCGCNCCCTATC-TTTAG-AATGT-TTAAA---GGCCATATTTT------NACNA 469
                       ** ***** *  **** ** ** ***** *****   ******* *         ** *

consensus_1649#0      ACTTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCA 718
consensus_1649#1      TTTTGCTTCCAT------TCCAACG-TCGAACG--TGC-TTCTACG--ATCGTA-TAGCA 516
                        **    * **      ******* ******   *** *******   ***** *****

consensus_1649#0      AATGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAA 778
consensus_1649#1      A-TGCTACGAA-GANCNAATCTGTATTGGACTATCTGG-----CNCTTTTCCCGTCAACA 569
                      * ***** ***  * * *********************        * ********** *

consensus_1649#0      AAAAATACTTAATGCATCCACACAAA------------------- 804
consensus_1649#1      AAATACTTTTGCTCCACCAAAACCCAGCCGTGTGACACCATTANG 614
                      *** *   **  * ** * * **  *