cluster # 1660

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Anopheles gambiae
cluster # 1660 cluster # 1660 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1660#0 length = 665 sequences # 1

consensus_1660#1 length = 478 sequences # 1

consensusID : consensus_1660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTGCGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGAAAGCACCCGTCATCGCAAACGTCATAAGGCCTTTTTCGTTGCAATGTCCTGATAATCAGTGTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGCTTGATGGAAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGCACCGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACTCAAACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAACAAACCA]

[+] EMBL BX625381             [GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTGCGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGAAAGCACCCGTCATCGCAAACGTCATAAGGCCTTTTTCGTTGCAATGTCCTGATAATCAGTGTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGCTTGATGGAAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGCACCGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACTCAAACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAACAAACCA]




>consensus_1660#0
GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTG
CGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGA
AAGCACCCGTCATCGCAAACGTCATAAGGCCTTTTTCGTTGCAATGTCCTGATAATCAGT
GTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGCTTGATGG
AAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGCAC
CGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACTCA
AACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCTTG
ACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCT
AATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAA
GAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAA
TGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAACA
AACCA

consensusID : consensus_1660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [CCGCTGCACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTACAAAGAATGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAGAGAATATCCGGACATTTAACTGGCAAAATTTACTGAAAAAAAACAATACAAATTACGCTACACAAAACAAAACAGCTGATAGAGTGAACCTTTCCTCGAACGCTACTGGCCCTAACACATTCGTGTTGCCAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAAT]

[+] EMBL BM576134             [CCGCTGCACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTACAAAGAATGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAGAGAATATCCGGACATTTAACTGGCAAAATTTACTGAAAAAAAACAATACAAATTACGCTACACAAAACAAAACAGCTGATAGAGTGAACCTTTCCTCGAACGCTACTGGCCCTAACACATTCGTGTTGCCAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAAT]




>consensus_1660#1
CCGCTGCACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTACAAAGAA
TGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAGAGAATAT
CCGGACATTTAACTGGCAAAATTTACTGAAAAAAAACAATACAAATTACGCTACACAAAA
CAAAACAGCTGATAGAGTGAACCTTTCCTCGAACGCTACTGGCCCTAACACATTCGTGTT
GCCAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATT
GATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGA
TTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTT
TCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1660#0      GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTG 60
consensus_1660#1      ------------------------------------------------------------
                                                                                  

consensus_1660#0      CGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGA 120
consensus_1660#1      ------------------------------------------------------------
                                                                                  

consensus_1660#0      AAGCACCCGTCATCGCAAACGTCAT-AAGGCCTTTTTCGTTGCAATGTCCTGATAATCAG 179
consensus_1660#1      ------CCGCTG-CACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTA 53
                            ***    * *   * ***  ****  *    *   * ** *    ** *     

consensus_1660#0      TGTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGC-TTGAT 238
consensus_1660#1      CAAAGAATGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAG 113
                             *         *  ***  *   * ****  *    *   * *  * * ** * 

consensus_1660#0      GGAAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGC 298
consensus_1660#1      AGAATATCCGGACATTTAACTG--GCAAA--ATTTACTGAAAAAAAACAATACAAATTAC 169
                       *** **    *  *  *****  * ***  **** *  * *** **** *      * *

consensus_1660#0      ACCGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACT 358
consensus_1660#1      GCT---ACACAAAACAAAACAGCT----GATAGAGTG--AACCTTTCCTCGAACGCTACT 220
                       *    ***   **  *     **    **** ***   **   **  *  *     ***

consensus_1660#0      CAAACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCT 418
consensus_1660#1      GGCCCTAACACATTCGTGTT-------GCCAAACCTATTGCGCTATTGTACATATATTCT 273
                          * * ** **  * ***         *******************************

consensus_1660#0      TGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAG 478
consensus_1660#1      TGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAG 333
                      ************************************************************

consensus_1660#0      CTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAG 538
consensus_1660#1      CTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAG 393
                      ************************************************************

consensus_1660#0      AAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACA 598
consensus_1660#1      AAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACA 453
                      ************************************************************

consensus_1660#0      AATGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAA 658
consensus_1660#1      AATGGTATAAAATAAAGAATTTAAT----------------------------------- 478
                      *************************                                   

consensus_1660#0      CAAACCA 665
consensus_1660#1      -------