cluster # 1669

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Anopheles gambiae
cluster # 1669 cluster # 1669 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1669#0 length = 795 sequences # 1

consensus_1669#1 length = 595 sequences # 1

consensusID : consensus_1669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence

                              [GGCAGAATCCCCACGATTAGAAAGTAGGATGAACCAGCTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCTGAGACACCAAGGGCAAGATTTATTGAGACTGATCTTCAGTTGATTTTACAACGACGGATGAGAAAAAGCCCCTTCGAACACTAAACATCCAAATACCAACCAAACTGTTAAGACATGCTTTCAAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATANTTCAAAGAGCTATGGAGGAAANTTNAANAAAACTCCACCGATTTGNATAACCATGAGTTCAAACAAACAATAAACCATAAAACNATGATCAATTAACCATCAATAACGAAAGATGTAATATNATAACGACCAGGGAACACCCTTTTGCAGACCGGTCAATAACAGGAAATCANATAAGCTTACCAAGGGTGGGTTGCATGAAGCCTGACANATTAACAACGATTNTTAACATTCGGCCGACTTTGGAACCATACCACAATGTGTGTCACACACACTCGCTCCGCGGAAACGGCTGGCTCGATCAAGGTCTCATCNACATTCCCTTCTACTAACTACNATAGCCCCNNAGT]

[+] EMBL AL693410             [GGCAGAATCCCCACGATTAGAAAGTAGGATGAACCAGCTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCTGAGACACCAAGGGCAAGATTTATTGAGACTGATCTTCAGTTGATTTTACAACGACGGATGAGAAAAAGCCCCTTCGAACACTAAACATCCAAATACCAACCAAACTGTTAAGACATGCTTTCAAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATANTTCAAAGAGCTATGGAGGAAANTTNAANAAAACTCCACCGATTTGNATAACCATGAGTTCAAACAAACAATAAACCATAAAACNATGATCAATTAACCATCAATAACGAAAGATGTAATATNATAACGACCAGGGAACACCCTTTTGCAGACCGGTCAATAACAGGAAATCANATAAGCTTACCAAGGGTGGGTTGCATGAAGCCTGACANATTAACAACGATTNTTAACATTCGGCCGACTTTGGAACCATACCACAATGTGTGTCACACACACTCGCTCCGCGGAAACGGCTGGCTCGATCAAGGTCTCATCNACATTCCCTTCTACTAACTACNATAGCCCCNNAGT]




>consensus_1669#0
GGCAGAATCCCCACGATTAGAAAGTAGGATGAACCAGCTCGTACTTGGAGTTGTTGGTTA
CCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGC
CCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCA
AAACATAGCATTCAGATCCCTCGTTTCGTTCTGAGACACCAAGGGCAAGATTTATTGAGA
CTGATCTTCAGTTGATTTTACAACGACGGATGAGAAAAAGCCCCTTCGAACACTAAACAT
CCAAATACCAACCAAACTGTTAAGACATGCTTTCAAACAAATATCATTCACGATTCGTTT
GTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCT
AATTTATGTTTACTACTATGGATANTTCAAAGAGCTATGGAGGAAANTTNAANAAAACTC
CACCGATTTGNATAACCATGAGTTCAAACAAACAATAAACCATAAAACNATGATCAATTA
ACCATCAATAACGAAAGATGTAATATNATAACGACCAGGGAACACCCTTTTGCAGACCGG
TCAATAACAGGAAATCANATAAGCTTACCAAGGGTGGGTTGCATGAAGCCTGACANATTA
ACAACGATTNTTAACATTCGGCCGACTTTGGAACCATACCACAATGTGTGTCACACACAC
TCGCTCCGCGGAAACGGCTGGCTCGATCAAGGTCTCATCNACATTCCCTTCTACTAACTA
CNATAGCCCCNNAGT

consensusID : consensus_1669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTGTCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGGGAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATGAACCAGTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCCGAGACACCAAGGGCAAGATTTATGAGAATGATCTTCAGTTGATTTACAACGACGATGAGAAAGCCCTCGAACACTAACATCCAAATACCAACAAACTGTTAAGACATGCTTTCAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATTAAAGAGCTATG]

[+] EMBL BX617377             [CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTGTCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGGGAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATGAACCAGTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCCGAGACACCAAGGGCAAGATTTATGAGAATGATCTTCAGTTGATTTACAACGACGATGAGAAAGCCCTCGAACACTAACATCCAAATACCAACAAACTGTTAAGACATGCTTTCAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATTAAAGAGCTATG]




>consensus_1669#1
CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTG
TCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGG
GAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATG
AACCAGTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCC
AAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACA
GTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCC
GAGACACCAAGGGCAAGATTTATGAGAATGATCTTCAGTTGATTTACAACGACGATGAGA
AAGCCCTCGAACACTAACATCCAAATACCAACAAACTGTTAAGACATGCTTTCAACAAAT
ATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGA
TTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATTAAAGAGCTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1669#0      ------------------------------------------------------------
consensus_1669#1      CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTG 60
                                                                                  

consensus_1669#0      ------------------------------------------------------------
consensus_1669#1      TCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGG 120
                                                                                  

consensus_1669#0      -----------------------------GGCAGAATCCCCACGATTAGAAAGTAGGATG 31
consensus_1669#1      GAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATG 180
                                                      ***       ***  * **   ******

consensus_1669#0      AACCAGCTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATC 91
consensus_1669#1      AACCAG-TCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATC 239
                      ****** *****************************************************

consensus_1669#0      CAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAAC 151
consensus_1669#1      CAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAAC 299
                      ************************************************************

consensus_1669#0      AGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTC 211
consensus_1669#1      AGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTC 359
                      ************************************************************

consensus_1669#0      TGAGACACCAAGGGCAAGATTTATTGAGACTGATCTTCAGTTGATTTTACAACGACGGAT 271
consensus_1669#1      CGAGACACCAAGGGCAAGATTTAT-GAGAATGATCTTCAGTTGATTT-ACAACGACG-AT 416
                       *********************** **** ***************** ********* **

consensus_1669#0      GAGAAAAAGCCCCTTCGAACACTAAACATCCAAATACCAACCAAACTGTTAAGACATGCT 331
consensus_1669#1      GAGAAAG----CCCTCGAACACTAA-CATCCAAATACCAAC-AAACTGTTAAGACATGCT 470
                      ******     ** *********** *************** ******************

consensus_1669#0      TTCAAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGT 391
consensus_1669#1      TTCAA-CAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGT 529
                      ***** ******************************************************

consensus_1669#0      ACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATANTTCAAA 451
consensus_1669#1      ACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATT--AAA 587
                      ***************************************************** *  ***

consensus_1669#0      GAGCTATGGAGGAAANTTNAANAAAACTCCACCGATTTGNATAACCATGAGTTCAAACAA 511
consensus_1669#1      GAGCTATG---------------------------------------------------- 595
                      ********                                                    

consensus_1669#0      ACAATAAACCATAAAACNATGATCAATTAACCATCAATAACGAAAGATGTAATATNATAA 571
consensus_1669#1      ------------------------------------------------------------
                                                                                  

consensus_1669#0      CGACCAGGGAACACCCTTTTGCAGACCGGTCAATAACAGGAAATCANATAAGCTTACCAA 631
consensus_1669#1      ------------------------------------------------------------
                                                                                  

consensus_1669#0      GGGTGGGTTGCATGAAGCCTGACANATTAACAACGATTNTTAACATTCGGCCGACTTTGG 691
consensus_1669#1      ------------------------------------------------------------
                                                                                  

consensus_1669#0      AACCATACCACAATGTGTGTCACACACACTCGCTCCGCGGAAACGGCTGGCTCGATCAAG 751
consensus_1669#1      ------------------------------------------------------------
                                                                                  

consensus_1669#0      GTCTCATCNACATTCCCTTCTACTAACTACNATAGCCCCNNAGT 795
consensus_1669#1      --------------------------------------------