cluster # 1673

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Anopheles gambiae
cluster # 1673 cluster # 1673 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1673#0 length = 669 sequences # 1

consensus_1673#1 length = 316 sequences # 1

consensusID : consensus_1673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGCCCACGCGTCCGACATAATAAACCAGACAAAGAGTGCTCAAGCTTCCAAACCGAGCGCGGTAGTTGATGCTGGCAATGGAAATGCAGGAACTGTAATCGATAGCGGAACGATCGCGACTGAAGAGTTGGACCTATCCCGATCGACTGATAACCCGGACGCGTTTGAATCTTCTAAGGATCCGATCGAGACGGAGCCAATTGAAAGCACGTCAGCTGGTACCGGTGGAAAGCTCGAACAAGATGCAATGTCTGTCGATGCAGAGGACGACAAGATAGTTAGCAATGCAAGTGAAGAAAAACAACCAGCAAGGGAGAGCTTAAATGAGAAGAAAACGGTAAAAACGATTCTGAGCCAGCTGCTTTCAACGAACGATTATTCCCACATCCTGAGTTCGCCGTTACCGCCCCACGAACATCACGGTCTGAAGGCTGGCCTGTTTCCGATCGTTGTGAACGAACAAGATTTAGGCTCGTGCATTGCGTACAGCCTGATGTCGCAGGAGTATCGCAAAATGCTCGATAGTATGCTAAGTGGAGGGACCGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGAAGCGAAAATCGACTTCGGTCAGCTCAACAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAAACGAGCAAGATA]

[+] EMBL BM587726             [CCGCCCACGCGTCCGACATAATAAACCAGACAAAGAGTGCTCAAGCTTCCAAACCGAGCGCGGTAGTTGATGCTGGCAATGGAAATGCAGGAACTGTAATCGATAGCGGAACGATCGCGACTGAAGAGTTGGACCTATCCCGATCGACTGATAACCCGGACGCGTTTGAATCTTCTAAGGATCCGATCGAGACGGAGCCAATTGAAAGCACGTCAGCTGGTACCGGTGGAAAGCTCGAACAAGATGCAATGTCTGTCGATGCAGAGGACGACAAGATAGTTAGCAATGCAAGTGAAGAAAAACAACCAGCAAGGGAGAGCTTAAATGAGAAGAAAACGGTAAAAACGATTCTGAGCCAGCTGCTTTCAACGAACGATTATTCCCACATCCTGAGTTCGCCGTTACCGCCCCACGAACATCACGGTCTGAAGGCTGGCCTGTTTCCGATCGTTGTGAACGAACAAGATTTAGGCTCGTGCATTGCGTACAGCCTGATGTCGCAGGAGTATCGCAAAATGCTCGATAGTATGCTAAGTGGAGGGACCGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGAAGCGAAAATCGACTTCGGTCAGCTCAACAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAAACGAGCAAGATA]




>consensus_1673#0
CCGCCCACGCGTCCGACATAATAAACCAGACAAAGAGTGCTCAAGCTTCCAAACCGAGCG
CGGTAGTTGATGCTGGCAATGGAAATGCAGGAACTGTAATCGATAGCGGAACGATCGCGA
CTGAAGAGTTGGACCTATCCCGATCGACTGATAACCCGGACGCGTTTGAATCTTCTAAGG
ATCCGATCGAGACGGAGCCAATTGAAAGCACGTCAGCTGGTACCGGTGGAAAGCTCGAAC
AAGATGCAATGTCTGTCGATGCAGAGGACGACAAGATAGTTAGCAATGCAAGTGAAGAAA
AACAACCAGCAAGGGAGAGCTTAAATGAGAAGAAAACGGTAAAAACGATTCTGAGCCAGC
TGCTTTCAACGAACGATTATTCCCACATCCTGAGTTCGCCGTTACCGCCCCACGAACATC
ACGGTCTGAAGGCTGGCCTGTTTCCGATCGTTGTGAACGAACAAGATTTAGGCTCGTGCA
TTGCGTACAGCCTGATGTCGCAGGAGTATCGCAAAATGCTCGATAGTATGCTAAGTGGAG
GGACCGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGAAGCGAAAAT
CGACTTCGGTCAGCTCAACAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAAACG
AGCAAGATA

consensusID : consensus_1673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [CAGATCGCCCAGGTNAANGGACGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGAAGCGAAAATCGACGTCGGTCAGGTATGTATCGGTGAGGTTGTATAATTTTAACCAGAACTTCACAAAAAACTGCTTTATCATTCCAAAACTATTCTATCAATCGCAGCTCAACAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAAACGAGCAAGATAAGAAACACAAAAATGCCTCTCACAGTGAAATTCATTTCCAGGTAGGGAAAGCAAAACATGTTTTACGTCAAAATCAGTTAAAACA]

[+] EMBL AL693439             [CAGATCGCCCAGGTNAANGGACGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGAAGCGAAAATCGACGTCGGTCAGGTATGTATCGGTGAGGTTGTATAATTTTAACCAGAACTTCACAAAAAACTGCTTTATCATTCCAAAACTATTCTATCAATCGCAGCTCAACAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAAACGAGCAAGATAAGAAACACAAAAATGCCTCTCACAGTGAAATTCATTTCCAGGTAGGGAAAGCAAAACATGTTTTACGTCAAAATCAGTTAAAACA]




>consensus_1673#1
CAGATCGCCCAGGTNAANGGACGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCC
AAATATGAAGCGAAAATCGACGTCGGTCAGGTATGTATCGGTGAGGTTGTATAATTTTAA
CCAGAACTTCACAAAAAACTGCTTTATCATTCCAAAACTATTCTATCAATCGCAGCTCAA
CAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAAACGAGCAAGATAAGAAACACA
AAAATGCCTCTCACAGTGAAATTCATTTCCAGGTAGGGAAAGCAAAACATGTTTTACGTC
AAAATCAGTTAAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1673#0      CCGCCCACGCGTCCGACATAATAAACCAGACAAAGAGTGCTCAAGCTTCCAAACCGAGCG 60
consensus_1673#1      -------------------------------------------------CAGATCGCCCA 11
                                                                       ** * **  * 

consensus_1673#0      CGGTAGTTGATGCTGGCAATGGAAATGCAGGAACTGTAATCGATAGCGGAACGATCGCGA 120
consensus_1673#1      GGTNAANGGACG---GCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGA 68
                       *  *   ** *   **  **  *   *   *   *    *** * * *  * *    **

consensus_1673#0      CTGAAGAGTTGGACCTATCCCGATCGACTGATAACCCGGACGCGTTTGAATCTTCTAAGG 180
consensus_1673#1      AGCGAAAATCG-----ACGTCGGTCAGGTATGTATC--GGTGAGGTTGTATAATTTTAAC 121
                          * * * *     *   ** **   *    * *  *  * * *** **  * * *  

consensus_1673#0      ATCCGATCGAGACGGAGCCAATTGAAAGCACGTCAGCTGGT--ACCGGTGGAAAGCTCGA 238
consensus_1673#1      CAGAACTTCACAAAAAACTGCTTTATCATTCCAAAACTATTCTATCAATCGCAGCTCAAC 181
                            *  * *   * *   ** *     *   * **  *  * *  * * *       

consensus_1673#0      ACAAGATGCAATGTCTGTCGATGCAGAGGACGACAAGATAGTTAGCAATGCAAGTGA-AG 297
consensus_1673#1      AACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAAA--ACGAGCAAGATAAGAAACAC 239
                      *   ******           *****  *  * *** *     *****   ***  * * 

consensus_1673#0      AAAAACAACCAGCAAGGGAGAGCTTAAATG-AGAAGAAAACGGTAAAAACGATTCTGAGC 356
consensus_1673#1      AAAAATGCCTCTCACAGTGAAATTCATTTCCAGGTAGGGAAAGCAAAACATGTTTTACGT 299
                      *****   *   **  *   *  * *  *  **      *  * ****    ** *  * 

consensus_1673#0      CAGCTGCTTTCAACGAACGATTATTCCCACATCCTGAGTTCGCCGTTACCGCCCCACGAA 416
consensus_1673#1      CAAAATCAGTTAAAACA------------------------------------------- 316
                      **    *  * **   *                                           

consensus_1673#0      CATCACGGTCTGAAGGCTGGCCTGTTTCCGATCGTTGTGAACGAACAAGATTTAGGCTCG 476
consensus_1673#1      ------------------------------------------------------------
                                                                                  

consensus_1673#0      TGCATTGCGTACAGCCTGATGTCGCAGGAGTATCGCAAAATGCTCGATAGTATGCTAAGT 536
consensus_1673#1      ------------------------------------------------------------
                                                                                  

consensus_1673#0      GGAGGGACCGGCGGTGTCATCACGATAGGAGCGTCCGAAAACAGTCCAAATATGAAGCGA 596
consensus_1673#1      ------------------------------------------------------------
                                                                                  

consensus_1673#0      AAATCGACTTCGGTCAGCTCAACAACGGATGCAGAAGACTCTCCTGCAGCAGCTGGCAAA 656
consensus_1673#1      ------------------------------------------------------------
                                                                                  

consensus_1673#0      AACGAGCAAGATA 669
consensus_1673#1      -------------