cluster # 168

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Anopheles gambiae
cluster # 168 cluster # 168 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_168#0 length = 757 sequences # 1

consensus_168#1 length = 189 sequences # 1

consensusID : consensus_168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence

                              [TTCAATTTGCGCGCACAATGCTGGTGCCTCTCGGGAAAAGTGTGCGTATGATTAGTTCGGAATCGGTCAATCATAAGCAAAGCGATATGCTGTGTGTATGTGTTAATGTGAGTGTTTGTGTGTCCAATGTCAGCGTGAAGATGTTGCTGTGTTCCACATTGTTCACCAAATCGACGCTCGGTGCAAGTGCACAGCAGCGCACATCACACAGCGCCAGCTCCAGACACAACACACTCTGCCCTTTAACCCATTTGACATTCCTAGAAACGCACTTGAACTCACACCACACACACATATTTACAAATTTAATCTTATCTTGTCGAGCATATCGTGCTGTCGCAGGACAGACAACACAATGTTTGAGGCCATTATGCGCGCGGGAAGGAAATTAATAACGTAAAAGCTGTTTACCATAATCGACTAGCAAATGAGCTTCTTGCAGATGATGATGCTGTTGTCAATAATGGTTGGAAAAGTTCGGCCAGGAACTCGGTGAGTTGATCCAGCACTTGGAAAAGCCAGTTGGTTTCGTAGGCGAACAAACTCCGTCGAGGGAGGTAGTCGTCGCGGTTATCCCTTTCTCTCTACTGTTGGTATTGACCACACGCACACACCTACGAGCTTCTGTGAAAATGAGACACAAACACACGCGCGCGCAAGAGGCAGATGGGTGATGATAAAGCAAAACAGGCAAAAATACATCGATCCCCCGTAGGTGGGAACGGGATGAATTATATATTGAATTATAGAGACCACA]

[+] EMBL BX618350             [TTCAATTTGCGCGCACAATGCTGGTGCCTCTCGGGAAAAGTGTGCGTATGATTAGTTCGGAATCGGTCAATCATAAGCAAAGCGATATGCTGTGTGTATGTGTTAATGTGAGTGTTTGTGTGTCCAATGTCAGCGTGAAGATGTTGCTGTGTTCCACATTGTTCACCAAATCGACGCTCGGTGCAAGTGCACAGCAGCGCACATCACACAGCGCCAGCTCCAGACACAACACACTCTGCCCTTTAACCCATTTGACATTCCTAGAAACGCACTTGAACTCACACCACACACACATATTTACAAATTTAATCTTATCTTGTCGAGCATATCGTGCTGTCGCAGGACAGACAACACAATGTTTGAGGCCATTATGCGCGCGGGAAGGAAATTAATAACGTAAAAGCTGTTTACCATAATCGACTAGCAAATGAGCTTCTTGCAGATGATGATGCTGTTGTCAATAATGGTTGGAAAAGTTCGGCCAGGAACTCGGTGAGTTGATCCAGCACTTGGAAAAGCCAGTTGGTTTCGTAGGCGAACAAACTCCGTCGAGGGAGGTAGTCGTCGCGGTTATCCCTTTCTCTCTACTGTTGGTATTGACCACACGCACACACCTACGAGCTTCTGTGAAAATGAGACACAAACACACGCGCGCGCAAGAGGCAGATGGGTGATGATAAAGCAAAACAGGCAAAAATACATCGATCCCCCGTAGGTGGGAACGGGATGAATTATATATTGAATTATAGAGACCACA]




>consensus_168#0
TTCAATTTGCGCGCACAATGCTGGTGCCTCTCGGGAAAAGTGTGCGTATGATTAGTTCGG
AATCGGTCAATCATAAGCAAAGCGATATGCTGTGTGTATGTGTTAATGTGAGTGTTTGTG
TGTCCAATGTCAGCGTGAAGATGTTGCTGTGTTCCACATTGTTCACCAAATCGACGCTCG
GTGCAAGTGCACAGCAGCGCACATCACACAGCGCCAGCTCCAGACACAACACACTCTGCC
CTTTAACCCATTTGACATTCCTAGAAACGCACTTGAACTCACACCACACACACATATTTA
CAAATTTAATCTTATCTTGTCGAGCATATCGTGCTGTCGCAGGACAGACAACACAATGTT
TGAGGCCATTATGCGCGCGGGAAGGAAATTAATAACGTAAAAGCTGTTTACCATAATCGA
CTAGCAAATGAGCTTCTTGCAGATGATGATGCTGTTGTCAATAATGGTTGGAAAAGTTCG
GCCAGGAACTCGGTGAGTTGATCCAGCACTTGGAAAAGCCAGTTGGTTTCGTAGGCGAAC
AAACTCCGTCGAGGGAGGTAGTCGTCGCGGTTATCCCTTTCTCTCTACTGTTGGTATTGA
CCACACGCACACACCTACGAGCTTCTGTGAAAATGAGACACAAACACACGCGCGCGCAAG
AGGCAGATGGGTGATGATAAAGCAAAACAGGCAAAAATACATCGATCCCCCGTAGGTGGG
AACGGGATGAATTATATATTGAATTATAGAGACCACA

consensusID : consensus_168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [CGACCCACGCGTCCGAACCGCTACGAACGACTGTTCCTTTCCGGTAATCGGGTACCTCTGTACAACTTCCATCCTCGATCAAGGGCGCAGTGGATAGCTGCGTTGTTTGAACTGTAACTTCGACATTGCTATGATGCTCGCTTCCGCCGTACGTAATTTGTCCCGTCGGTCATTCTCGACCTCCAAAGC]

[+] EMBL BM621009             [CGACCCACGCGTCCGAACCGCTACGAACGACTGTTCCTTTCCGGTAATCGGGTACCTCTGTACAACTTCCATCCTCGATCAAGGGCGCAGTGGATAGCTGCGTTGTTTGAACTGTAACTTCGACATTGCTATGATGCTCGCTTCCGCCGTACGTAATTTGTCCCGTCGGTCATTCTCGACCTCCAAAGC]




>consensus_168#1
CGACCCACGCGTCCGAACCGCTACGAACGACTGTTCCTTTCCGGTAATCGGGTACCTCTG
TACAACTTCCATCCTCGATCAAGGGCGCAGTGGATAGCTGCGTTGTTTGAACTGTAACTT
CGACATTGCTATGATGCTCGCTTCCGCCGTACGTAATTTGTCCCGTCGGTCATTCTCGAC
CTCCAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_168#0      TTCAATTTGCGCGCACAATGCTGGTGCCTCTCGGGAAAAGTGTGCGTATGATTAGTTCGG 60
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      AATCGGTCAATCATAAGCAAAGCGATATGCTGTGTGTATGTGTTAATGTGAGTGTTTGTG 120
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      TGTCCAATGTCAGCGTGAAGATGTTGCTGTGTTCCACATTGTTCACCAAATCGACGCTCG 180
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      GTGCAAGTGCACAGCAGCGCACATCACACAGCGCCAGCTCCAGACACAACACACTCTGCC 240
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      CTTTAACCCATTTGACATTCCTAGAAACGCACTTGAACTCACACCACACACACATATTTA 300
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      CAAATTTAATCTTATCTTGTCGAGCATATCGTGCTGTCGCAGGACAGACAACACAATGTT 360
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      TGAGGCCATTATGCGCGCGGGAAGGAAATTAATAACGTAAAAGCTGTTTACCATAATCGA 420
consensus_168#1      ---------------------------------------CGACCCACGCGTCCGAACCGC 21
                                                              * *       *  ** ** 

consensus_168#0      CTAGCAAATGAGCTTCTTGCAGATGATGATGCTGTTGTCAATAATGGTTGGAAAAGTTCG 480
consensus_168#1      TACGAACGACTGTTCCTTTCCGGTAATCGGGTACCTCTGTACAACTTCC----ATCCTCG 77
                        * *     * * *** * * * **   *    * *  * **         *   ***

consensus_168#0      GCCAGGAACTCGGTGAGTTGATCCAGCACTTGGAAAAGCCAGTTGGTTTCG-TAGGCGAA 539
consensus_168#1      ATCAAGGGCGCAGTGGATAGCTGCGTTGTTTGAACTGTAACTTCGACATTGCTATGATGC 137
                       ** *  * * ***  * * * *     *** *        * *   * * ** *    

consensus_168#0      CAAACTCCGTCG-AGGGAGGTAGTCGTCGCGGTTATCCCTTTCTCTCTACTGTTGGTATT 598
consensus_168#1      TCGCTTCCGCCGTACGTAATTTGTCCCGTCGGTCATTC-TCGACCTCCAAAGC------- 189
                          **** ** * * *  * ***    **** ** * *    *** *  *        

consensus_168#0      GACCACACGCACACACCTACGAGCTTCTGTGAAAATGAGACACAAACACACGCGCGCGCA 658
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      AGAGGCAGATGGGTGATGATAAAGCAAAACAGGCAAAAATACATCGATCCCCCGTAGGTG 718
consensus_168#1      ------------------------------------------------------------
                                                                                 

consensus_168#0      GGAACGGGATGAATTATATATTGAATTATAGAGACCACA 757
consensus_168#1      ---------------------------------------