cluster # 1706

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Anopheles gambiae
cluster # 1706 cluster # 1706 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1706#0 length = 724 sequences # 1

consensus_1706#1 length = 491 sequences # 1

consensusID : consensus_1706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence

                              [TCGCACGAGGTNAATCGTACGTGGCTTGCGGATTTTACCGATTTGAAAGCGATACCAAAGTCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGAAAATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTCATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGCTTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTTTTACAAGTTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTCATCGGGCATAGGTAATAGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGACTTTGTATTGCTCGTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGGAGGATGCGTATGGCGGCATGTGGGAAGTTGTCACAAAGAAGGCTTCATGACATCTTTCGCGTGC]

[+] EMBL BX469787             [TCGCACGAGGTNAATCGTACGTGGCTTGCGGATTTTACCGATTTGAAAGCGATACCAAAGTCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGAAAATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTCATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGCTTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTTTTACAAGTTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTCATCGGGCATAGGTAATAGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGACTTTGTATTGCTCGTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGGAGGATGCGTATGGCGGCATGTGGGAAGTTGTCACAAAGAAGGCTTCATGACATCTTTCGCGTGC]




>consensus_1706#0
TCGCACGAGGTNAATCGTACGTGGCTTGCGGATTTTACCGATTTGAAAGCGATACCAAAG
TCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGAA
AATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAA
CTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCT
CAGCATTCTCATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGC
TTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATAT
TGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTTT
TACAAGTTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGAC
AGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTCAT
CGGGCATAGGTAATAGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGACTTTGTATT
GCTCGTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGG
AGGATGCGTATGGCGGCATGTGGGAAGTTGTCACAAAGAAGGCTTCATGACATCTTTCGC
GTGC

consensusID : consensus_1706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CCGATCGTACCGTGGCTTGCGGATTTTACCGACTTGAAAGCGATACCAAAGTCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGAAAATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTTATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGCTTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTTTCGCGTGCTTTTTGGTCACGTGGATTATCTTTTACACCGGCATCCATTTCGATAGCGTAGTCATAGAAAAGAGTTTATAGA]

[+] EMBL BM606270             [CCGATCGTACCGTGGCTTGCGGATTTTACCGACTTGAAAGCGATACCAAAGTCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGAAAATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTTATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGCTTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTTTCGCGTGCTTTTTGGTCACGTGGATTATCTTTTACACCGGCATCCATTTCGATAGCGTAGTCATAGAAAAGAGTTTATAGA]




>consensus_1706#1
CCGATCGTACCGTGGCTTGCGGATTTTACCGACTTGAAAGCGATACCAAAGTCGTGGAAA
AGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGAAAATGGCGAA
AAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAGAATG
GACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCT
TATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGCTTTGTTTGC
TCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGACGAGGA
TGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTTTCGCGTGCTT
TTTGGTCACGTGGATTATCTTTTACACCGGCATCCATTTCGATAGCGTAGTCATAGAAAA
GAGTTTATAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1706#0      TCGCACGAGGTNAATCGTAC-GTGGCTTGCGGATTTTACCGATTTGAAAGCGATACCAAA 59
consensus_1706#1      ----------CCGATCGTACCGTGGCTTGCGGATTTTACCGACTTGAAAGCGATACCAAA 50
                                   ******* ********************* *****************

consensus_1706#0      GTCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGA 119
consensus_1706#1      GTCGTGGAAAAGAGTTCAATTAATCAGTAACAATGGTAGCTAAAAGCCCCAATTCCGAGA 110
                      ************************************************************

consensus_1706#0      AAATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCA 179
consensus_1706#1      AAATGGCGAAAAGCAAACAGTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCA 170
                      ************************************************************

consensus_1706#0      ACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGC 239
consensus_1706#1      ACTCAGAATGGACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGC 230
                      ************************************************************

consensus_1706#0      TCAGCATTCTCATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTG 299
consensus_1706#1      TCAGCATTCTTATCGGCATAGTAATGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTG 290
                      ********** *************************************************

consensus_1706#0      CTTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATA 359
consensus_1706#1      CTTTGTTTGCTCTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATA 350
                      ************************************************************

consensus_1706#0      TTGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTT 419
consensus_1706#1      TTGACGAGGATGCGTATGGCGGCATGTGGGAAGTTGTAAAAGAAGGCTTCATGACATCTT 410
                      ************************************************************

consensus_1706#0      TTACAAGTTCCCACATCGCTTCAGTGTGGAATCGTGCTATAAAACCCAACTCAG-AATGG 478
consensus_1706#1      TCGCGTGCTTTTTGGTCACGT--GGATTATCTTTTACACCGGCATCCATTTCGATAGCGT 468
                      *  *  * *      ** * *  *  *    *  * *      * ***  **   *  * 

consensus_1706#0      ACAGAAAAGGACGATTTTCTGGATGTCGTGTACTGGGCCCGGCAAGTGCTCAGCATTCTC 538
consensus_1706#1      AGTCATAGAAAAGAGTTTATAGA------------------------------------- 491
                      *   * *   * ** *** * **                                     

consensus_1706#0      ATCGGGCATAGGTAATAGGGTCTCATTCCGTTGAAAGGCTTCATCGCACTTGACTTTGTA 598
consensus_1706#1      ------------------------------------------------------------
                                                                                  

consensus_1706#0      TTGCTCGTACTGAATTGTGGAGCCGTCTATCTGTACAGCACTAGCTTCCAAAATATTGAC 658
consensus_1706#1      ------------------------------------------------------------
                                                                                  

consensus_1706#0      GGAGGATGCGTATGGCGGCATGTGGGAAGTTGTCACAAAGAAGGCTTCATGACATCTTTC 718
consensus_1706#1      ------------------------------------------------------------
                                                                                  

consensus_1706#0      GCGTGC 724
consensus_1706#1      ------