cluster # 1715

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Anopheles gambiae
cluster # 1715 cluster # 1715 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1715#0 length = 754 sequences # 1

consensus_1715#1 length = 664 sequences # 1

consensusID : consensus_1715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence

                              [CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATCACCATTCGTATCCCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCAACACTGGCACCGTAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAAACAGTGTATACCTTCACCAACTCACCCGCTCCCACCGTCTTCGGCGCAGATCTTACACGCACACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCTCCCCTGGTCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAGAGTGAGTGAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAGCATNACGAGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC]

[+] EMBL AL693657             [CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATCACCATTCGTATCCCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCAACACTGGCACCGTAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAAACAGTGTATACCTTCACCAACTCACCCGCTCCCACCGTCTTCGGCGCAGATCTTACACGCACACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCTCCCCTGGTCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAGAGTGAGTGAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAGCATNACGAGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC]




>consensus_1715#0
CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATC
ACCATTCGTATCCCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTC
CGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGT
GCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCA
AGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCC
ACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCC
GCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAG
CCGCAACACTGGCACCGTAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAAACAG
TGTATACCTTCACCAACTCACCCGCTCCCACCGTCTTCGGCGCAGATCTTACACGCACAC
CAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCTCCCCTGG
TCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAGAGTGAGT
GAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAGCATNACG
AGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC

consensusID : consensus_1715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTTTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCCAACACTGGCCACCGCTAAAGCCGGGCAGCAAACGTGAGCACGGTGAAGCAAAAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAGATCTTACACGCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGTGTCTCCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCCAACGGGAGTGAGTGAGACAGAGACAGGCAGCAGTGAAACCCCCCGTAAGAGAAAAAAAGAAGC]

[+] EMBL BM600742             [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTTTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCCAACACTGGCCACCGCTAAAGCCGGGCAGCAAACGTGAGCACGGTGAAGCAAAAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAGATCTTACACGCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGTGTCTCCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCCAACGGGAGTGAGTGAGACAGAGACAGGCAGCAGTGAAACCCCCCGTAAGAGAAAAAAAGAAGC]




>consensus_1715#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCC
TATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTA
TGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTG
CGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACC
TCTTTGTGTCACCCACTCTTATGTGTTTTTGTGTTACGCGAAAATCGTGTGGTGAGCGCG
TGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGAT
ACCCATTCCAAAGCCGCCAACACTGGCCACCGCTAAAGCCGGGCAGCAAACGTGAGCACG
GTGAAGCAAAAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAG
ATCTTACACGCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATC
GTTGTGTCTCCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGC
CAACGGGAGTGAGTGAGACAGAGACAGGCAGCAGTGAAACCCCCCGTAAGAGAAAAAAAG
AAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1715#0      CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATC 60
consensus_1715#1      ----------------------------------------------CCGCCCACGCGTCC 14
                                                                       *  *      *

consensus_1715#0      ACCATTCGTATCC-CCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCT 119
consensus_1715#1      GCC-CACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCT 73
                       **   **  *** **********************************************

consensus_1715#0      CCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCG 179
consensus_1715#1      CCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCG 133
                      ************************************************************

consensus_1715#0      TGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCC 239
consensus_1715#1      TGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCC 193
                      ************************************************************

consensus_1715#0      AAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACC 299
consensus_1715#1      AAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACC 253
                      ************************************************************

consensus_1715#0      CACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGC 359
consensus_1715#1      CACTCTTATGTGTTT-TTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGC 312
                      *************** ********************************************

consensus_1715#0      CGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAA 419
consensus_1715#1      CGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAA 372
                      ************************************************************

consensus_1715#0      GCCGC-AACACTGGC-ACCG-TAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAA 476
consensus_1715#1      GCCGCCAACACTGGCCACCGCTAAAGCCGG-GCAGCAAA-CGTGAGCACGGTG-AAGCAA 429
                      ***** ********* **** ********* *******  ************* ******

consensus_1715#0      ACAGTGTATACCTTCACCAACTCACCCG--CTCCCACCGTCTTCGGCGCAGATCTTACAC 534
consensus_1715#1      AAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAGATCTTACAC 489
                      *     * * *****************   ******************************

consensus_1715#0      GCAC-ACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCT 593
consensus_1715#1      GCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGTGTCT 549
                      **** ************************************************** ****

consensus_1715#0      CCCCTGGTCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAG 653
consensus_1715#1      CCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCC--AACGGG 607
                      ******    *  **************************************   **** *

consensus_1715#0      AGTGAGTGAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAG 713
consensus_1715#1      AGTGAGTGAGACAGAGA-CAGGCAG-CAGTGAAACCCCCCGTAAGAGAAAAAA--AGAAG 663
                      ***************** ******  *************************    *****

consensus_1715#0      CATNACGAGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC 754
consensus_1715#1      C---------------------------------------- 664
                      *