cluster # 1730

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Anopheles gambiae
cluster # 1730 cluster # 1730 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1730#0 length = 395 sequences # 1

consensus_1730#1 length = 272 sequences # 1

consensusID : consensus_1730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TTCGGAGCAGAATCGGCCACGAGGNNTACCAAGAAACAATAGTTGAGGCGNTACAAACCAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGGATTGACTGTTTCGGATTGAGGCTATGTAAGATGGGTGTAACGTGAAATGGGGAACACGAATTGGGCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAGCTTCCTAAGATTTGGTGACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGACTGGTTGTTCCACTAGAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGTAGTGTGGCCGTAACATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC]

[+] EMBL BX469319             [TTCGGAGCAGAATCGGCCACGAGGNNTACCAAGAAACAATAGTTGAGGCGNTACAAACCAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGGATTGACTGTTTCGGATTGAGGCTATGTAAGATGGGTGTAACGTGAAATGGGGAACACGAATTGGGCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAGCTTCCTAAGATTTGGTGACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGACTGGTTGTTCCACTAGAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGTAGTGTGGCCGTAACATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC]




>consensus_1730#0
TTCGGAGCAGAATCGGCCACGAGGNNTACCAAGAAACAATAGTTGAGGCGNTACAAACCA
AATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGGATTG
ACTGTTTCGGATTGAGGCTATGTAAGATGGGTGTAACGTGAAATGGGGAACACGAATTGG
GCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAGCTTCCTAAGATTT
GGTGACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGACTGGTTGTTCCACTA
GAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGTAGTGTGGCCGTAAC
ATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC

consensusID : consensus_1730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCANTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGACTTGATGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGGGAAAGATTGGCTCTGGCTAGGGACGAATATNATANTGTTATGAGTACAATCCCTAACTTTGGTGCANTGTAGAATATATTTTGTTGACATTGA]

[+] EMBL BX469366             [CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCANTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGACTTGATGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGGGAAAGATTGGCTCTGGCTAGGGACGAATATNATANTGTTATGAGTACAATCCCTAACTTTGGTGCANTGTAGAATATATTTTGTTGACATTGA]




>consensus_1730#1
CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCA
NTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTT
CGTCGACTTGATGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGGG
AAAGATTGGCTCTGGCTAGGGACGAATATNATANTGTTATGAGTACAATCCCTAACTTTG
GTGCANTGTAGAATATATTTTGTTGACATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1730#0      ------TTCGGAGCAGAATCGGC-CACGAGGNNTACCAAGAAACAA-TAGTTGAGGCGN- 51
consensus_1730#1      CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCA 60
                              *      ******** *  *     **** * ****** ***********  

consensus_1730#0      -TACAAACCAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTT 110
consensus_1730#1      NTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTT 120
                       ******* ***************************************************

consensus_1730#0      CGTCGGATTGACTGTTTCGGA-TTGA-GGCTATGTAAGATGGGTGTAACGTGA-AATGGG 167
consensus_1730#1      CGTCGACTTGA-TGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGG 179
                      *****  **** ********* **** *****    ************ **** ******

consensus_1730#0      GAACACGAATTGGGCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAG 227
consensus_1730#1      GAA---AGATTGG--CTCTGGCTAGGGACG-AATATNA--TANTGT-TA--TGAGTACAA 228
                      ***     *****   ***********  * * **  *  ** *** **  * **** * 

consensus_1730#0      CTTCCTAAGATTTGGTG-ACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGAC 286
consensus_1730#1      --TCCCTAACTTTGGTGCANTGTAGAATATATTTTGTTGACATTGA-------------- 272
                        ***  *  ******* * * *** *  **     **     **               

consensus_1730#0      TGGTTGTTCCACTAGAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGT 346
consensus_1730#1      ------------------------------------------------------------
                                                                                  

consensus_1730#0      AGTGTGGCCGTAACATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC 395
consensus_1730#1      -------------------------------------------------