|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1398 fasta sequence
[GATCGCCCCAGGATTACGGGAAGCGGAAAATCAGTGACGGAACGGGATCTGGAAGTACTGGAATTGCAATATCGCTGTTGGTGAAGTGTGGGCAATACACGCGAATGGTTCTTCCGTTTTGGAGTGAATTGATTTTTGCTATCCATTTTTTCTCTGTGTGTGTGCGCGCGTGTGTGAATCTGTGGGCAGTGTACACAATCATCTGACCCTGTGCCGTTACAATTCAGCCGTAATCGGAGGGTTGATTTTGCAGTTTCCTATTTCCACACATTTACGGTGGAAGCAGGAAGGGGTTGGCCAAAAAACAAAAAAAAAGGCCTTAAAAAACCAAAAGAGGCCCGCTCTTGCAACTCTCGTTCGGAACCAGTTTGTTTCCACACACTTTAAGGGGCACAACANTTTCAAAATTTTAAAGAANCAAGACAAACAAAAAAAAAACCGGCCGGGTTGTTTCCCCCCCTTGGGCTTTTTGGGGTTGGCCATTTCTACAAAACATTTGNCGCCAACCCCAAACGCAAATGGAATTAATCTTTGGGGCCCACACCAAGTGAATTAACCCTTGGGGGGGCCAAATGCGAAAGAGCTGGGGGCNANGGCGCAACCCCAAGGGCTTCCCGGAAAAGGCAATTGCCAAAGTTCCCCCCGGAGGGAACAGCAAATTACCCCGGTCTTTTAAAAACCCCCGGGANTTCCAAAAACCCCCGCCGAGTGATNACCGCGTTGGCAGCCTTCCCGAACGACACACGGGAGCGCGAAGACCCCCANGGAGCCGGCCAGCGGGCGTTGCGGATCCNAGCCCACCCCCAANACGGCGCANAAGCCNCGCAGACGTGNCCAAGCCACCCNACGAATTCAGTACGNCCGGCAGATGATTCACCTCGAGCACGCACTCATNACAGCACATCAGCCGCCCCACAATCACCCAANCNCGACCCGACGACGAGAGATGGATCAACAGCCTGGAAGCNGGCCCGGTACCANGNAGCAAACTAAACCGCAAAACAGNGCACAGACGACTCTTCNACAAACCCCCCTGTGGACNATTCCCAGNGCGCCCNGTCAGCANAAGANTAGATNAAGGCNAACGCNACCGGANTAGGCCACAAACNCCCTNTCCGGGTGAAAAACAACCCCTNAAGTGTCGNGGCCGCAAGNGANAAAGGAGGGGATCACCTACTCCACCCCNCNGGAACTAACCTAGGATGAGCNANNGGAACCACAANANCCCGGCACNCGGCCAGCCGGAAGAGAAGGANCAACCGGGAANAGATTGCTATNGAGCCACNGCATTNGTAGATGCCAGCACAACCCAACNTTGCAGCACAAGCGNGGTGACNACACCGGAGAGATGATGGTGAAANNCAAGCCCACGCGGTGCGCCNACACCAAACNNCCACT]
[+] EMBL AL693902 [GATCGCCCCAGGATTACGGGAAGCGGAAAATCAGTGACGGAACGGGATCTGGAAGTACTGGAATTGCAATATCGCTGTTGGTGAAGTGTGGGCAATACACGCGAATGGTTCTTCCGTTTTGGAGTGAATTGATTTTTGCTATCCATTTTTTCTCTGTGTGTGTGCGCGCGTGTGTGAATCTGTGGGCAGTGTACACAATCATCTGACCCTGTGCCGTTACAATTCAGCCGTAATCGGAGGGTTGATTTTGCAGTTTCCTATTTCCACACATTTACGGTGGAAGCAGGAAGGGGTTGGCCAAAAAACAAAAAAAAAGGCCTTAAAAAACCAAAAGAGGCCCGCTCTTGCAACTCTCGTTCGGAACCAGTTTGTTTCCACACACTTTAAGGGGCACAACANTTTCAAAATTTTAAAGAANCAAGACAAACAAAAAAAAAACCGGCCGGGTTGTTTCCCCCCCTTGGGCTTTTTGGGGTTGGCCATTTCTACAAAACATTTGNCGCCAACCCCAAACGCAAATGGAATTAATCTTTGGGGCCCACACCAAGTGAATTAACCCTTGGGGGGGCCAAATGCGAAAGAGCTGGGGGCNANGGCGCAACCCCAAGGGCTTCCCGGAAAAGGCAATTGCCAAAGTTCCCCCCGGAGGGAACAGCAAATTACCCCGGTCTTTTAAAAACCCCCGGGANTTCCAAAAACCCCCGCCGAGTGATNACCGCGTTGGCAGCCTTCCCGAACGACACACGGGAGCGCGAAGACCCCCANGGAGCCGGCCAGCGGGCGTTGCGGATCCNAGCCCACCCCCAANACGGCGCANAAGCCNCGCAGACGTGNCCAAGCCACCCNACGAATTCAGTACGNCCGGCAGATGATTCACCTCGAGCACGCACTCATNACAGCACATCAGCCGCCCCACAATCACCCAANCNCGACCCGACGACGAGAGATGGATCAACAGCCTGGAAGCNGGCCCGGTACCANGNAGCAAACTAAACCGCAAAACAGNGCACAGACGACTCTTCNACAAACCCCCCTGTGGACNATTCCCAGNGCGCCCNGTCAGCANAAGANTAGATNAAGGCNAACGCNACCGGANTAGGCCACAAACNCCCTNTCCGGGTGAAAAACAACCCCTNAAGTGTCGNGGCCGCAAGNGANAAAGGAGGGGATCACCTACTCCACCCCNCNGGAACTAACCTAGGATGAGCNANNGGAACCACAANANCCCGGCACNCGGCCAGCCGGAAGAGAAGGANCAACCGGGAANAGATTGCTATNGAGCCACNGCATTNGTAGATGCCAGCACAACCCAACNTTGCAGCACAAGCGNGGTGACNACACCGGAGAGATGATGGTGAAANNCAAGCCCACGCGGTGCGCCNACACCAAACNNCCACT]
consensusID : consensus_1752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[GATCGCCGAGGTTNAAGCAGTGAAGCAAGAAGCTTTTCCCCGTTCATTACCGCGCTGGTGCCTGTGCGTGTGTACGTTTGTATGTGTGCGTGGTGGTGTAAAGGTGTTTGATGGAAATTAAACCTTTCGCTCGGCAGTGATCAAAGTGAGCAAAGAAGAAGAAGAGGAAAAAAGCTAAAAAAACGGGAAGCGGAAAATTCAGTGACCGGAACGGGATCGGAAGTACCGGAATTGCAATATCGCTGTTGGTGAAGGTGGGCAATACACGCGAATGGTTCTTCCGTTTTGGAGTGAATTGATTTTTGCTATCCATTTTTTCTCTGTGTGTGTGCGCGCGTGTGTGAATCTGTGGGCAGTGTAAAATGCATCGACCCTGTGCGTGTTACATTCACCGTATCGAGGTGATTGATTTCTATTCAAATTAGTGAGAGAGGTTGCAAAACAAAAAAAGCTAAACCAAAAGCCGTTGAATTGTTGAAAGTGTTAAATAGGAAATTGAATTAAACAAAAAACNAAAAACGCGTGTCCCCTGCTTGGTGCATTTAAATGCCACCACAGATACTGCNCACAGATACTGGGACAGCAGCGGCAGACACCAGCTCGAAGCATGCAGTCCCGCGACATCCGTTTAACCGATCAANCCGGNCGCTGCTCGAGCGGCGGGCCAGCCGCAGGTGGNCAGCAACAANAANCAAGAACAGTAANGGGGNCGGTCCGACCAGCAGCCGAGGA]
[+] EMBL AL931804 [GATCGCCGAGGTTNAAGCAGTGAAGCAAGAAGCTTTTCCCCGTTCATTACCGCGCTGGTGCCTGTGCGTGTGTACGTTTGTATGTGTGCGTGGTGGTGTAAAGGTGTTTGATGGAAATTAAACCTTTCGCTCGGCAGTGATCAAAGTGAGCAAAGAAGAAGAAGAGGAAAAAAGCTAAAAAAACGGGAAGCGGAAAATTCAGTGACCGGAACGGGATCGGAAGTACCGGAATTGCAATATCGCTGTTGGTGAAGGTGGGCAATACACGCGAATGGTTCTTCCGTTTTGGAGTGAATTGATTTTTGCTATCCATTTTTTCTCTGTGTGTGTGCGCGCGTGTGTGAATCTGTGGGCAGTGTAAAATGCATCGACCCTGTGCGTGTTACATTCACCGTATCGAGGTGATTGATTTCTATTCAAATTAGTGAGAGAGGTTGCAAAACAAAAAAAGCTAAACCAAAAGCCGTTGAATTGTTGAAAGTGTTAAATAGGAAATTGAATTAAACAAAAAACNAAAAACGCGTGTCCCCTGCTTGGTGCATTTAAATGCCACCACAGATACTGCNCACAGATACTGGGACAGCAGCGGCAGACACCAGCTCGAAGCATGCAGTCCCGCGACATCCGTTTAACCGATCAANCCGGNCGCTGCTCGAGCGGCGGGCCAGCCGCAGGTGGNCAGCAACAANAANCAAGAACAGTAANGGGGNCGGTCCGACCAGCAGCCGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1752#0 GATCGCCCCAGGATTACGGGAAGCGGAAAATCAGTGACGGAACGGGATCTGGAAGTACTG 60
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 GAATTGCAATATCGCTGTTGGTGAAGTGTGGGCAATACACGCGAATGGTTCTTCCGTTTT 120
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 GGAGTGAATTGATTTTTGCTATCCATTTTTTCTCTGTGTGTGTGCGCGCGTGTGTGAATC 180
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 TGTGGGCAGTGTACACAATCATCTGACCCTGTGCCGTTACAATTCAGCCGTAATCGGAGG 240
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 GTTGATTTTGCAGTTTCCTATTTCCACACATTTACGGTGGAAGCAGGAAGGGGTTGGCCA 300
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 AAAAACAAAAAAAAAGGCCTTAAAAAACCAAAAGAGGCCCGCTCTTGCAACTCTCGTTCG 360
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 GAACCAGTTTGTTTCCACACACTTTAAGGGGCACAACANTTTCAAAATTTTAAAGAANCA 420
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 AGACAAACAAAAAAAAAACCGGCCGGGTTGTTTCCCCCCCTTGGGCTTTTTGGGGTTGGC 480
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 CATTTCTACAAAACATTTGNCGCCAACCCCAAACGCAAATGGAATTAATCTTTGGGGCCC 540
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 ACACCAAGTGAATTAACCCTTGGGGGGGCCAAATGCGAAAGAGCTGGGGGCNANGGCGCA 600
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 ACCCCAAGGGCTTCCCGGAAAAGGCAATTGCCAAAGTTCCCCCCGGAGGGAACAGCAAAT 660
consensus_1752#1 ------------------------------------------------------------
consensus_1752#0 TACCCCGGTCTTTTAAAAACCCCCGGGANTTCCAAAAACCCCCGCCGAGTGATNACCGCG 720
consensus_1752#1 ------GATCGCCGAGGTTNAAGCAGTGAAGCAAGAAGCTTTTCCCCGTTCATTACCGCG 54
* ** * * * * * ** * ** * ** ******
consensus_1752#0 TTGGCAGCCTTCCCGAACGACACACGGGAGCGCGAAGACCCCCANGGAGCCGGCCAGCGG 780
consensus_1752#1 CTGGT-GCCTGTGCGTGTG-TACGTTTGTATGTGTG------CGTGGTGGTG-TAAAGGT 105
*** **** ** * ** * * * * ** * * * *
consensus_1752#0 GCGTTGCGGATCCNAGCCCACCCCCAANACGGCGCANAAGCCNCGCAGACGTGNCCAAGC 840
consensus_1752#1 GTTTGATGGAAATTAAACCTTTCGCTCGGCAGTGATCAAAGTGAGCAAAGAAGAAGAAGA 165
* * *** * ** * * * * * ** *** * * ***
consensus_1752#0 CACCCNACGAATTCAGTACGNCCGGCAGATGATTCACCT-CGAGCACGCACTCATNA-CA 898
consensus_1752#1 GGAAAAAAGCTAAAAAAACGGGAAGCGGAAAATTCAGTGACCGGAACGGGATCGGAAGTA 225
* * * *** ** ** ***** * * *** ** * *
consensus_1752#0 GCACATCAGCCGCCCCACAATCACCCAANCNCGACCCGACGACGAGAGATGGATCAACAG 958
consensus_1752#1 CCGGAATTGCAATATCGCTGTTGGTGAAGGTGGGCAATAC-ACGCGA-ATGGTTCTTCCG 283
* * ** * * * ** * * ** *** ** **** ** * *
consensus_1752#0 CCTGGAAGCNGGCCCGGTACCANGNAGCAAACTAAACC---GCAAAACAGNGCACAGACG 1015
consensus_1752#1 TTTTGGAGTGAATTGATTTTTGCTATCCATTTTTTCTCTGTGTGTGTGCGCGCGTGTGTG 343
* * ** * ** * * * * ** *
consensus_1752#0 ACTCTTCNACAAACCCCCCTGTGGACNATTCCCAGNGCGCCCNGTC------AGCANAAG 1069
consensus_1752#1 AATCTGTGGGCAGTGTAAAATGCATCGACCCTGTGCGTGTTACATTCACCGTATCGAGGT 403
* *** * * * * * * * * * *
consensus_1752#0 ANTAGATNAAGGCNAACGCNACCGGANTAGGCCACAAACNCCCTNTCCGGGTGAAAAACA 1129
consensus_1752#1 GATTGATTTCTATTCAAATTAGTGAGAGAGGTTGCAAA-ACAAAAAAAGCTAAACCAAAA 462
* *** * * * *** **** * * * ** *
consensus_1752#0 ACCCCTNAAGTGTCGNGGCCGCAAGNGANAAA---GGAGGGGATCACCTACTCCACCCCN 1186
consensus_1752#1 GCCGTTGAATTGTTGAAAGTGTTAAATAGGAAATTGAATTAAACAAAAAACNAAAAACGC 522
** * ** *** * * * * ** * * * * ** * *
consensus_1752#0 CNGGAACTAACCTAGGATGAGCNANNGGAACCACAANANCCCGGCACNCGGCCAGCCGGA 1246
consensus_1752#1 GTGTCCCCTGCTTGGTGCATTTAAATGCCACCACAGATACT--GCNCACAGATA-CTGGG 579
* * * * * * * ****** * ** * * * * * **
consensus_1752#0 AGAGAAGGANCAACCGGGAANAGATTGC-TATNGAGCCACNGCATTNGTAGATGCCAGCA 1305
consensus_1752#1 ACAGCAGCGGCAGACACCAGCTCGAAGCATGCAGTCCCGCGACATCCGT--TTAACCGAT 637
* ** ** ** * * ** * * ** * *** ** * * *
consensus_1752#0 CAACCCAACNTTGCAGCACAAGCGNGGTGACNACACCGGAGAGATGATGGTGAAANNCAA 1365
consensus_1752#1 CAANCCGGNC--GCTGCTCGAGCGGCGGGCCAGCCGCAGGTGGNCAGCAACAANAANCAA 695
*** ** ** ** * **** * * * * * * * * * ****
consensus_1752#0 GCCCACGCGGTGCGCCNACACCAAACNNCCACT----- 1398
consensus_1752#1 GAACA-GTAANGGGGNCGGTCCGACCAGCAGCCGAGGA 732
* ** * * * ** * * * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||