cluster # 1757

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Anopheles gambiae
cluster # 1757 cluster # 1757 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1757#0 length = 684 sequences # 1

consensus_1757#1 length = 523 sequences # 1

consensusID : consensus_1757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGCGGACGCGTGGGATTCCGTTTGCCAACTCGACCGATCGCGACCGATAGCGGGCAATAATTGTAATGAGCAAGCAAGCAGCACAACACCATAGAGTCTAAATGTACGTTTTACCGTAAATGCGTGGCAATTTGAAGCCGTATCGTGTAATATGAAAGCAGCACCCTCAGAAACAGTTCCGTGAGTGATCGTGCAAAAGAAGAAGAAAAAGAAGAAAAGTATAAATCAATTGAATCCAAGAGTGAAAGTGGGGTGAAAATAAGCAAAAGAAAGCAAAAGAAATTGAAAAAGAAATCTTCACCCATCGCTCGCTTGATCGTATCGTAGTAGTCATCGCGAAAACCAGGATGAAGGCAGGAAACCCTCCCCGTGTGTCGTCGTAGTGGTGGTTGTGTGATAAGTGTTGTAGTTCTTTCTGTTTGTTGTCGAGGAGGGTGTTTTTTTTAAAGTATTTGTTTTGCTGCTCATGTGCTTTGTTTTAACACACCATCATATCCCCCATTTTATCCACCTACAACCTTCCCTTCCCTACACGTTTTGATCTGCGAGACAACAGCGCGCGAACATCGTGCGGGGCGCATCCTTGCAGCAAAATTGGGTTGTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAATTTTCCTCACCAAAACGTTACGCGTGACGTGTGACAGCT]

[+] EMBL BM605490             [CCGCGGACGCGTGGGATTCCGTTTGCCAACTCGACCGATCGCGACCGATAGCGGGCAATAATTGTAATGAGCAAGCAAGCAGCACAACACCATAGAGTCTAAATGTACGTTTTACCGTAAATGCGTGGCAATTTGAAGCCGTATCGTGTAATATGAAAGCAGCACCCTCAGAAACAGTTCCGTGAGTGATCGTGCAAAAGAAGAAGAAAAAGAAGAAAAGTATAAATCAATTGAATCCAAGAGTGAAAGTGGGGTGAAAATAAGCAAAAGAAAGCAAAAGAAATTGAAAAAGAAATCTTCACCCATCGCTCGCTTGATCGTATCGTAGTAGTCATCGCGAAAACCAGGATGAAGGCAGGAAACCCTCCCCGTGTGTCGTCGTAGTGGTGGTTGTGTGATAAGTGTTGTAGTTCTTTCTGTTTGTTGTCGAGGAGGGTGTTTTTTTTAAAGTATTTGTTTTGCTGCTCATGTGCTTTGTTTTAACACACCATCATATCCCCCATTTTATCCACCTACAACCTTCCCTTCCCTACACGTTTTGATCTGCGAGACAACAGCGCGCGAACATCGTGCGGGGCGCATCCTTGCAGCAAAATTGGGTTGTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAATTTTCCTCACCAAAACGTTACGCGTGACGTGTGACAGCT]




>consensus_1757#0
CCGCGGACGCGTGGGATTCCGTTTGCCAACTCGACCGATCGCGACCGATAGCGGGCAATA
ATTGTAATGAGCAAGCAAGCAGCACAACACCATAGAGTCTAAATGTACGTTTTACCGTAA
ATGCGTGGCAATTTGAAGCCGTATCGTGTAATATGAAAGCAGCACCCTCAGAAACAGTTC
CGTGAGTGATCGTGCAAAAGAAGAAGAAAAAGAAGAAAAGTATAAATCAATTGAATCCAA
GAGTGAAAGTGGGGTGAAAATAAGCAAAAGAAAGCAAAAGAAATTGAAAAAGAAATCTTC
ACCCATCGCTCGCTTGATCGTATCGTAGTAGTCATCGCGAAAACCAGGATGAAGGCAGGA
AACCCTCCCCGTGTGTCGTCGTAGTGGTGGTTGTGTGATAAGTGTTGTAGTTCTTTCTGT
TTGTTGTCGAGGAGGGTGTTTTTTTTAAAGTATTTGTTTTGCTGCTCATGTGCTTTGTTT
TAACACACCATCATATCCCCCATTTTATCCACCTACAACCTTCCCTTCCCTACACGTTTT
GATCTGCGAGACAACAGCGCGCGAACATCGTGCGGGGCGCATCCTTGCAGCAAAATTGGG
TTGTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAATTTTCCTCACCAAAA
CGTTACGCGTGACGTGTGACAGCT

consensusID : consensus_1757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [CCGCCCACGCGTCCGCGAACATCGTGCGGGGCGCATCCTTGCAGCAGATTGGTTGTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAAGTTTCCTCACCAAAACGTTACGCGTGACGTGTGACGGCTGCTAGTACAAGTAGCCGAGGAGCTGTGCTTCCTTCTGTGTCTGTCTCTACCCACCGTCTCGCCTGTCCTTCCCGGATCGTATCATTTAAAGGGTTTGTGCGTGGTTGTTTGTGCGCGCGCGTGCGGGTGGGACGCGTTGGCGACAAGGGGGCAAGGACGACAACGCTGGAGGATACGCTCTTCCGGTTGAGCAAGTTGCGCGAACGTTTGAAGGCGATGCTTCGCTCACCGGCACATCTGATCGGACATGGGCCGGGAGCGGGCGGTGGTGGCGTGGTGGGACTGCACAGCCACGCTTCGTCGCCGCCCCACGCCCGGCCGTCGCTGTTCGATTCCTGTCACAGGAAAATCCGGCTCATCGGTGGCGGCCCGGTCGCATTTCTCGGC]

[+] EMBL BM610073             [CCGCCCACGCGTCCGCGAACATCGTGCGGGGCGCATCCTTGCAGCAGATTGGTTGTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAAGTTTCCTCACCAAAACGTTACGCGTGACGTGTGACGGCTGCTAGTACAAGTAGCCGAGGAGCTGTGCTTCCTTCTGTGTCTGTCTCTACCCACCGTCTCGCCTGTCCTTCCCGGATCGTATCATTTAAAGGGTTTGTGCGTGGTTGTTTGTGCGCGCGCGTGCGGGTGGGACGCGTTGGCGACAAGGGGGCAAGGACGACAACGCTGGAGGATACGCTCTTCCGGTTGAGCAAGTTGCGCGAACGTTTGAAGGCGATGCTTCGCTCACCGGCACATCTGATCGGACATGGGCCGGGAGCGGGCGGTGGTGGCGTGGTGGGACTGCACAGCCACGCTTCGTCGCCGCCCCACGCCCGGCCGTCGCTGTTCGATTCCTGTCACAGGAAAATCCGGCTCATCGGTGGCGGCCCGGTCGCATTTCTCGGC]




>consensus_1757#1
CCGCCCACGCGTCCGCGAACATCGTGCGGGGCGCATCCTTGCAGCAGATTGGTTGTGTTT
GTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAAGTTTCCTCACCAAAACGTTACGC
GTGACGTGTGACGGCTGCTAGTACAAGTAGCCGAGGAGCTGTGCTTCCTTCTGTGTCTGT
CTCTACCCACCGTCTCGCCTGTCCTTCCCGGATCGTATCATTTAAAGGGTTTGTGCGTGG
TTGTTTGTGCGCGCGCGTGCGGGTGGGACGCGTTGGCGACAAGGGGGCAAGGACGACAAC
GCTGGAGGATACGCTCTTCCGGTTGAGCAAGTTGCGCGAACGTTTGAAGGCGATGCTTCG
CTCACCGGCACATCTGATCGGACATGGGCCGGGAGCGGGCGGTGGTGGCGTGGTGGGACT
GCACAGCCACGCTTCGTCGCCGCCCCACGCCCGGCCGTCGCTGTTCGATTCCTGTCACAG
GAAAATCCGGCTCATCGGTGGCGGCCCGGTCGCATTTCTCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1757#0      CCGCGGACGCGTGGGATTCCGTTTGCCAACTCGACCGATCGCGACCGATAGCGGGCAATA 60
consensus_1757#1      ------------------------------------------------------------
                                                                                  

consensus_1757#0      ATTGTAATGAGCAAGCAAGCAGCACAACACCATAGAGTCTAAATGTACGTTTTACCGTAA 120
consensus_1757#1      ------------------------------------------------------------
                                                                                  

consensus_1757#0      ATGCGTGGCAATTTGAAGCCGTATCGTGTAATATGAAAGCAGCACCCTCAGAAACAGTTC 180
consensus_1757#1      --------CCGCCC-ACGCGTCCGCGAACATCGTGCGGGGCGCATCCTT-GCAGCAGATT 50
                              *      * **     **   *   **   *  *** ***  * * *** * 

consensus_1757#0      CGTGAGTGATCGTGCAAAAGAAGAAGAAAAAGAAGAAAAGTATAAATCAATTGAATCCAA 240
consensus_1757#1      GGTT-GTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAAGTTTCCTCACCA 109
                       **  *** * *** *** *** *     **    ** ** *  **    **     * *

consensus_1757#0      GAGTGAAAGTGGGGTGAAAATAAGCAAAAGAAAGCAAAAGAAATTGAAAAAGAAATCTTC 300
consensus_1757#1      AAACGTTA--CGCGTGACGTGTGACGGCTGCTAGTACAAGTAGCCGAGGAGCTGTGCTTC 167
                       *  *  *   * ****       *    *  ** * *** *   **  *      ****

consensus_1757#0      ACCCATCGCTCGCTTGATCGTATCGTAGTAGTCATCGCGAAAACCAGGATGAAGGCAGGA 360
consensus_1757#1      CTTCTGTGTCTGTCTCTACCCACCGTCTCGCCTGTCCT----TCCCGGATCGTATCATTT 223
                         *   *   *  *   *  * ***        **       ** ****     **   

consensus_1757#0      AACCCTCCCCGTGTGTCGTCGTAGTGGTGGTTGTGTGATAAGTGTTGTAGTTCTTTCTGT 420
consensus_1757#1      AAAGGGTTT-GTGCGTGGTTGT--TTGTGCGCGCGCG-TGCGGGTGGGACGCGTTGGCGA 279
                      **        *** ** ** **  * ***   * * * *  * ** * *    **   * 

consensus_1757#0      TTGTTGTCGAGGAGGGTGTTTTTTTTAAAGTATTTGTTTTGCTGCTCATGTGCTTTGTTT 480
consensus_1757#1      CAA--GGGGGCAAGGACGACAACGCTGGAGGATACGCTCTTCCGGTTGAGCAAGTTGCGC 337
                           *  *   ***  *       *  ** **  * * * * * *   *    ***   

consensus_1757#0      TAACACACCATCATATCCCCCATTTTATCCACCTACAACCTTCCCTTCCCTACACGTTTT 540
consensus_1757#1      GAACGT----TTGAAGGCGATGCTTCGCTCACCGGCA-CATCTGATCGGACATGGGCCGG 392
                       ***      *   *  *     **    ****  ** * *    *     *   *    

consensus_1757#0      GATCTGCGAGACAACAGCGCGCGAACATCGTGCGGG-GCGCATCCTTGCAGCA--AAATT 597
consensus_1757#1      GAGCGG-GCGGTGGTGGCGTGGTGGGACTGCACAGCCACGCTTCGTCGCCGCCCCACGCC 451
                      ** * * * *      *** *     *  *  * *   *** ** * ** **   *    

consensus_1757#0      GGGTTGTGTTTGTGAAAAGGAAAAGTTTTAAATGAAATAGAAAGAAAATTTTCCTCACCA 657
consensus_1757#1      CGGCCGTCGCTGT--------------TCGATTCCTGTCACAGGAAAATCCGGCTCATCG 497
                       **  **   ***              *  * *    *   * ******    **** * 

consensus_1757#0      A-AACGTTACGCGTGACGTGTGACAGCT 684
consensus_1757#1      GTGGCGGCCCG-GTCGCATTTCTCGGC- 523
                          **   ** **  * * *  * **