cluster # 1765

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Anopheles gambiae
cluster # 1765 cluster # 1765 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1765#0 length = 550 sequences # 1

consensus_1765#1 length = 480 sequences # 1

consensusID : consensus_1765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CCGCGGACGCGTGGGTCTAGATCGCGATCTAGAACTACGGACGCGTGGGCGGTTCGGTTCGGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATACCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTACAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCTATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTTCTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCGAAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCAAACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAGAAGTGTGCGTGCGTGCGTGCGTGTGTTTGGTTAATCACCAGACACCGTGTTGCTTTAGTGACATGTTGAATAATTCGCTAAG]

[+] EMBL BM588926             [CCGCGGACGCGTGGGTCTAGATCGCGATCTAGAACTACGGACGCGTGGGCGGTTCGGTTCGGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATACCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTACAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCTATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTTCTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCGAAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCAAACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAGAAGTGTGCGTGCGTGCGTGCGTGTGTTTGGTTAATCACCAGACACCGTGTTGCTTTAGTGACATGTTGAATAATTCGCTAAG]




>consensus_1765#0
CCGCGGACGCGTGGGTCTAGATCGCGATCTAGAACTACGGACGCGTGGGCGGTTCGGTTC
GGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATA
CCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTA
CAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCT
ATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTT
CTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCG
AAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCA
AACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAGAAGTGTGCGTGC
GTGCGTGCGTGTGTTTGGTTAATCACCAGACACCGTGTTGCTTTAGTGACATGTTGAATA
ATTCGCTAAG

consensusID : consensus_1765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [CCGCCCACGCGTCCGCAAACGGTTCGGTTCGGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATACCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTACAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCTATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTTCTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCGAAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCAAACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAAAAGTGTGCGTGCGTGCGTGCGTGTGTTTGGTTAATCACCAGA]

[+] EMBL BM629780             [CCGCCCACGCGTCCGCAAACGGTTCGGTTCGGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATACCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTACAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCTATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTTCTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCGAAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCAAACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAAAAGTGTGCGTGCGTGCGTGCGTGTGTTTGGTTAATCACCAGA]




>consensus_1765#1
CCGCCCACGCGTCCGCAAACGGTTCGGTTCGGCTGAGCCGTTGCTCCTGCAATCCGAGCA
TAGAGGAAACACGCGTTCGGACCCGAAATACCGGTGACGGGAGCGTGGTGGTGTGTGTGT
GTGTGTGTGTGTGAGAGTCGTGTGTTTGTACAGTGTTTAGGCTCGCGGTTAATCGCGGTT
TGGTAAATGCGATCGCGCCACAACACTTCTATTGAACTTTCGTGCACCGCGTAACCGGGT
ATACGAACCTTTTTTTTTGTTTGCATAGTTCTAGCATTAAACCAATCGAAAGTGCGGTTC
GAAGGGAAAGTGAATCAATCCGCGAGGCCGAAAATAGCACGTGCAAACACATTTAATTGA
GCCAACCGAAGAAAAACACAGCCAATCTCAAACTTAAACAGCAAACAGTACGTGGCACCT
TGTTAGAGAGTGCGTTAAAAGTGTGCGTGCGTGCGTGCGTGTGTTTGGTTAATCACCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1765#0      CCGCGGACGCGTGGGTCTAGATCGCGATCTAGAACTACGGACGCGTGGGCGGTTCGGTTC 60
consensus_1765#1      ------------------------------CCGCCCACGCGTCCGCAAACGGTTCGGTTC 30
                                                        * ***    **    ***********

consensus_1765#0      GGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATA 120
consensus_1765#1      GGCTGAGCCGTTGCTCCTGCAATCCGAGCATAGAGGAAACACGCGTTCGGACCCGAAATA 90
                      ************************************************************

consensus_1765#0      CCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTA 180
consensus_1765#1      CCGGTGACGGGAGCGTGGTGGTGTGTGTGTGTGTGTGTGTGTGAGAGTCGTGTGTTTGTA 150
                      ************************************************************

consensus_1765#0      CAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCT 240
consensus_1765#1      CAGTGTTTAGGCTCGCGGTTAATCGCGGTTTGGTAAATGCGATCGCGCCACAACACTTCT 210
                      ************************************************************

consensus_1765#0      ATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTT 300
consensus_1765#1      ATTGAACTTTCGTGCACCGCGTAACCGGGTATACGAACCTTTTTTTTTGTTTGCATAGTT 270
                      ************************************************************

consensus_1765#0      CTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCG 360
consensus_1765#1      CTAGCATTAAACCAATCGAAAGTGCGGTTCGAAGGGAAAGTGAATCAATCCGCGAGGCCG 330
                      ************************************************************

consensus_1765#0      AAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCA 420
consensus_1765#1      AAAATAGCACGTGCAAACACATTTAATTGAGCCAACCGAAGAAAAACACAGCCAATCTCA 390
                      ************************************************************

consensus_1765#0      AACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAGAAGTGTGCGTGC 480
consensus_1765#1      AACTTAAACAGCAAACAGTACGTGGCACCTTGTTAGAGAGTGCGTTAAAAGTGTGCGTGC 450
                      *********************************************** ************

consensus_1765#0      GTGCGTGCGTGTGTTTGGTTAATCACCAGACACCGTGTTGCTTTAGTGACATGTTGAATA 540
consensus_1765#1      GTGCGTGCGTGTGTTTGGTTAATCACCAGA------------------------------ 480
                      ******************************                              

consensus_1765#0      ATTCGCTAAG 550
consensus_1765#1      ----------