cluster # 1795

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Anopheles gambiae
cluster # 1795 cluster # 1795 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1795#0 length = 413 sequences # 1

consensus_1795#1 length = 274 sequences # 1

consensusID : consensus_1795#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [CCGAGGTTACTGCCGCAAGGGACGATTACGATCTCGAGTTTGAGGACAACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGCGATGCGCTGATGATCAAACCCGGGGGGGGAGGACGAACCGTCGAAGCAAACGTTTGAGCCGATGTTTATTCCCTCGCCGCTGGATAGTATGGCGATGGCACAGGTGAAACCGTCGGCTGGCCGGCCCGCGAATCGGCCACGAAGCGCAACGTCGAAATTCTGCCAGACGAAACGGCCGACGTTGTGGGGCGAAGGGCAGGACCGCGTTTGGGGCGCTGCAAACGAACGGGTCGATCCCGTTCTATCTTGCACCGATCGGGGTCGGACGGGTCGGGTTGTTTCCGTTCGATGGCAAAAGCCGTGCTG]

[+] EMBL AL694155             [CCGAGGTTACTGCCGCAAGGGACGATTACGATCTCGAGTTTGAGGACAACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGCGATGCGCTGATGATCAAACCCGGGGGGGGAGGACGAACCGTCGAAGCAAACGTTTGAGCCGATGTTTATTCCCTCGCCGCTGGATAGTATGGCGATGGCACAGGTGAAACCGTCGGCTGGCCGGCCCGCGAATCGGCCACGAAGCGCAACGTCGAAATTCTGCCAGACGAAACGGCCGACGTTGTGGGGCGAAGGGCAGGACCGCGTTTGGGGCGCTGCAAACGAACGGGTCGATCCCGTTCTATCTTGCACCGATCGGGGTCGGACGGGTCGGGTTGTTTCCGTTCGATGGCAAAAGCCGTGCTG]




>consensus_1795#0
CCGAGGTTACTGCCGCAAGGGACGATTACGATCTCGAGTTTGAGGACAACAGGGCACATG
GGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGCGATGCGCTGATGA
TCAAACCCGGGGGGGGAGGACGAACCGTCGAAGCAAACGTTTGAGCCGATGTTTATTCCC
TCGCCGCTGGATAGTATGGCGATGGCACAGGTGAAACCGTCGGCTGGCCGGCCCGCGAAT
CGGCCACGAAGCGCAACGTCGAAATTCTGCCAGACGAAACGGCCGACGTTGTGGGGCGAA
GGGCAGGACCGCGTTTGGGGCGCTGCAAACGAACGGGTCGATCCCGTTCTATCTTGCACC
GATCGGGGTCGGACGGGTCGGGTTGTTTCCGTTCGATGGCAAAAGCCGTGCTG

consensusID : consensus_1795#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [GCCAGAATCGCCACGAGGTGTACCGCCGCAAGGACGATTACGATCTCGAGTTTGAGGACAACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGCGATGCGCTGATATCCACGGGGAAGGACGAACCGTCGAAGCGAAACGTTTGAGCCGATGTTNTATTCCCTCGCCGCGTGGATAGTATGGCGATGGCACAGGTGAAACCGTCCGGCTGGCCCGGACCGCCGGAATCGGGGCACGGAAGCGCAAACGT]

[+] EMBL BX466088             [GCCAGAATCGCCACGAGGTGTACCGCCGCAAGGACGATTACGATCTCGAGTTTGAGGACAACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGCGATGCGCTGATATCCACGGGGAAGGACGAACCGTCGAAGCGAAACGTTTGAGCCGATGTTNTATTCCCTCGCCGCGTGGATAGTATGGCGATGGCACAGGTGAAACCGTCCGGCTGGCCCGGACCGCCGGAATCGGGGCACGGAAGCGCAAACGT]




>consensus_1795#1
GCCAGAATCGCCACGAGGTGTACCGCCGCAAGGACGATTACGATCTCGAGTTTGAGGACA
ACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGCG
ATGCGCTGATATCCACGGGGAAGGACGAACCGTCGAAGCGAAACGTTTGAGCCGATGTTN
TATTCCCTCGCCGCGTGGATAGTATGGCGATGGCACAGGTGAAACCGTCCGGCTGGCCCG
GACCGCCGGAATCGGGGCACGGAAGCGCAAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1795#0      ------------CCGAGGT-TACTGCCGCAAGGGACGATTACGATCTCGAGTTTGAGGAC 47
consensus_1795#1      GCCAGAATCGCCACGAGGTGTACCGCCGCAAGG-ACGATTACGATCTCGAGTTTGAGGAC 59
                                   ****** *** ********* **************************

consensus_1795#0      AACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGC 107
consensus_1795#1      AACAGGGCACATGGGTTCTTGCGCCGCCAGGACGACGACATCGACGAAGCGATCGAGAGC 119
                      ************************************************************

consensus_1795#0      GATGCGCTGATGATCAAACCCGGGGGGGGAGGACGAACCGTCGAAGC-AAACGTTTGAGC 166
consensus_1795#1      GATGCGCTGATATCCAC-------GGGGAAGGACGAACCGTCGAAGCGAAACGTTTGAGC 172
                      ***********   **        **** ****************** ************

consensus_1795#0      CGATGTTT-ATTCCCTCGCCGC-TGGATAGTATGGCGATGGCACAGGTGAAACCGTC-GG 223
consensus_1795#1      CGATGTTNTATTCCCTCGCCGCGTGGATAGTATGGCGATGGCACAGGTGAAACCGTCCGG 232
                      *******  ************* ********************************** **

consensus_1795#0      CTGGCC-GGCCCGC--GAATCGGC-CACG-AAGCGCAA-CGTCGAAATTCTGCCAGACGA 277
consensus_1795#1      CTGGCCCGGACCGCCGGAATCGGGGCACGGAAGCGCAAACGT------------------ 274
                      ****** ** ****  *******  **** ******** ***                  

consensus_1795#0      AACGGCCGACGTTGTGGGGCGAAGGGCAGGACCGCGTTTGGGGCGCTGCAAACGAACGGG 337
consensus_1795#1      ------------------------------------------------------------
                                                                                  

consensus_1795#0      TCGATCCCGTTCTATCTTGCACCGATCGGGGTCGGACGGGTCGGGTTGTTTCCGTTCGAT 397
consensus_1795#1      ------------------------------------------------------------
                                                                                  

consensus_1795#0      GGCAAAAGCCGTGCTG 413
consensus_1795#1      ----------------