cluster # 18

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Anopheles gambiae
cluster # 18 cluster # 18 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_18#0 length = 679 sequences # 1

consensus_18#1 length = 625 sequences # 1

consensusID : consensus_18#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CGTAACATTGAAGGAACGCTACAGGGCAGAACAGTTTCAAAAAATGCTCCTAAGTAGCAGCAGCAAGTGCTCAATTCTAACCGTCCTGGTGTTGGTGAACGTGATAGGCGAGTTTCCATTGCTTCTAGCTAAGGCCGGTGACAGTGACCTAAATGAGGTGCGCATTGGATTTGGAACATCGTTCAGCGCACGGCGGGACGTACGGTTCCATCTTTATACGCCGCTGAACCGCGCCGATGCGCACGTATTCTCGATCGAGACGGTGGACACGCTGATGCGATCCTTCTACAACTCCAGCCATCCTGTGAGAATTATCATCCACGGATGGTTTAACAATGCCACCTCGCTTGTGATACAGGGCATCAAGGATGCGTACCTCGATGCCGGCAGCTACAACGTGATCGGTGTGGATTGGGGCGTCGGTGCGGGTGAGTCCTACTTCCGTGCGTCACAGTACACGATCGCGGTCGGGTTGGTGGTGGCGGACCTGGTCAAGCAGCTCGTACGCTCCGGTATGGCCGAGCTGGACAGGCTCTACCTGGTCGGCCACAGTCTCGGGGCACACATTGCCGGCAATGCGGGTCACGCGCTCAAAGCTCAACCACTCCACGTGATCTACGGGCTCGATCCGGNCTCGATCAACTTCTTCCAGGACGAGCCGGACTCGCGCCTCAGCCAG]

[+] EMBL BX626162             [CGTAACATTGAAGGAACGCTACAGGGCAGAACAGTTTCAAAAAATGCTCCTAAGTAGCAGCAGCAAGTGCTCAATTCTAACCGTCCTGGTGTTGGTGAACGTGATAGGCGAGTTTCCATTGCTTCTAGCTAAGGCCGGTGACAGTGACCTAAATGAGGTGCGCATTGGATTTGGAACATCGTTCAGCGCACGGCGGGACGTACGGTTCCATCTTTATACGCCGCTGAACCGCGCCGATGCGCACGTATTCTCGATCGAGACGGTGGACACGCTGATGCGATCCTTCTACAACTCCAGCCATCCTGTGAGAATTATCATCCACGGATGGTTTAACAATGCCACCTCGCTTGTGATACAGGGCATCAAGGATGCGTACCTCGATGCCGGCAGCTACAACGTGATCGGTGTGGATTGGGGCGTCGGTGCGGGTGAGTCCTACTTCCGTGCGTCACAGTACACGATCGCGGTCGGGTTGGTGGTGGCGGACCTGGTCAAGCAGCTCGTACGCTCCGGTATGGCCGAGCTGGACAGGCTCTACCTGGTCGGCCACAGTCTCGGGGCACACATTGCCGGCAATGCGGGTCACGCGCTCAAAGCTCAACCACTCCACGTGATCTACGGGCTCGATCCGGNCTCGATCAACTTCTTCCAGGACGAGCCGGACTCGCGCCTCAGCCAG]




>consensus_18#0
CGTAACATTGAAGGAACGCTACAGGGCAGAACAGTTTCAAAAAATGCTCCTAAGTAGCAG
CAGCAAGTGCTCAATTCTAACCGTCCTGGTGTTGGTGAACGTGATAGGCGAGTTTCCATT
GCTTCTAGCTAAGGCCGGTGACAGTGACCTAAATGAGGTGCGCATTGGATTTGGAACATC
GTTCAGCGCACGGCGGGACGTACGGTTCCATCTTTATACGCCGCTGAACCGCGCCGATGC
GCACGTATTCTCGATCGAGACGGTGGACACGCTGATGCGATCCTTCTACAACTCCAGCCA
TCCTGTGAGAATTATCATCCACGGATGGTTTAACAATGCCACCTCGCTTGTGATACAGGG
CATCAAGGATGCGTACCTCGATGCCGGCAGCTACAACGTGATCGGTGTGGATTGGGGCGT
CGGTGCGGGTGAGTCCTACTTCCGTGCGTCACAGTACACGATCGCGGTCGGGTTGGTGGT
GGCGGACCTGGTCAAGCAGCTCGTACGCTCCGGTATGGCCGAGCTGGACAGGCTCTACCT
GGTCGGCCACAGTCTCGGGGCACACATTGCCGGCAATGCGGGTCACGCGCTCAAAGCTCA
ACCACTCCACGTGATCTACGGGCTCGATCCGGNCTCGATCAACTTCTTCCAGGACGAGCC
GGACTCGCGCCTCAGCCAG

consensusID : consensus_18#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CACAGTCCTTGGGGCACGACANTTGCCCGGCAATNCGGGACACTCGCTCNAGAGCTCNAACCACTCCACGTGATCTACGGGCTCGATCCGGCCTCGATCAACTTCTTCCAGGACGAGCCGGACTCGCTGCCTCAGCCCAGACGATGCACTGTACCGTGGAGGTTATCCACACCAACACGCAACTCTCCGGCTATCCGGCACCGCTCGGGCATGTCGACTTCTACATGAACTATGGGCGTAAGCAGCCCGGCTGCAAGACGGACGTCTGTAGCCATGGCCGCTCGACCGAGTACTTTATCGAGTCGTTACGTAACACGACCAAAGGATTCTGGGGCGTCGGGTGTAACGATTACGCCGAGATCCGGCAGCGCACGTGCTACAACATCAAGCAGCAGGCGGTGATGGGTGGTGAGTACTGGCAGAAGAACATTACGGCCGGTGTGTACACGGTCGAGACGCTGGCAGAGTCACCGTACGCGATGGGTTACGTTCATTAGTAGCGTGTGTTACTTAAGTTATGTCACGCCTCGTGTGCAAGAAGTGTTAATCATGGTAAATAACAGTAAATAAACGTCCTCATATAATGATAATGCAAAAAAAANTANNAANAAAAGGGCAGCATGTG]

[-] EMBL BX466749             [CACAGTCCTTGGGGCACGACANTTGCCCGGCAATNCGGGACACTCGCTCNAGAGCTCNAACCACTCCACGTGATCTACGGGCTCGATCCGGCCTCGATCAACTTCTTCCAGGACGAGCCGGACTCGCTGCCTCAGCCCAGACGATGCACTGTACCGTGGAGGTTATCCACACCAACACGCAACTCTCCGGCTATCCGGCACCGCTCGGGCATGTCGACTTCTACATGAACTATGGGCGTAAGCAGCCCGGCTGCAAGACGGACGTCTGTAGCCATGGCCGCTCGACCGAGTACTTTATCGAGTCGTTACGTAACACGACCAAAGGATTCTGGGGCGTCGGGTGTAACGATTACGCCGAGATCCGGCAGCGCACGTGCTACAACATCAAGCAGCAGGCGGTGATGGGTGGTGAGTACTGGCAGAAGAACATTACGGCCGGTGTGTACACGGTCGAGACGCTGGCAGAGTCACCGTACGCGATGGGTTACGTTCATTAGTAGCGTGTGTTACTTAAGTTATGTCACGCCTCGTGTGCAAGAAGTGTTAATCATGGTAAATAACAGTAAATAAACGTCCTCATATAATGATAATGCAAAAAAAANTANNAANAAAAGGGCAGCATGTG]




>consensus_18#1
CACAGTCCTTGGGGCACGACANTTGCCCGGCAATNCGGGACACTCGCTCNAGAGCTCNAA
CCACTCCACGTGATCTACGGGCTCGATCCGGCCTCGATCAACTTCTTCCAGGACGAGCCG
GACTCGCTGCCTCAGCCCAGACGATGCACTGTACCGTGGAGGTTATCCACACCAACACGC
AACTCTCCGGCTATCCGGCACCGCTCGGGCATGTCGACTTCTACATGAACTATGGGCGTA
AGCAGCCCGGCTGCAAGACGGACGTCTGTAGCCATGGCCGCTCGACCGAGTACTTTATCG
AGTCGTTACGTAACACGACCAAAGGATTCTGGGGCGTCGGGTGTAACGATTACGCCGAGA
TCCGGCAGCGCACGTGCTACAACATCAAGCAGCAGGCGGTGATGGGTGGTGAGTACTGGC
AGAAGAACATTACGGCCGGTGTGTACACGGTCGAGACGCTGGCAGAGTCACCGTACGCGA
TGGGTTACGTTCATTAGTAGCGTGTGTTACTTAAGTTATGTCACGCCTCGTGTGCAAGAA
GTGTTAATCATGGTAAATAACAGTAAATAAACGTCCTCATATAATGATAATGCAAAAAAA
ANTANNAANAAAAGGGCAGCATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_18#0      CGTAACATTGAAGGAACGCTACAGGGCAGAACAGTTTCAAAAAATGCTCCTAAGTAGCAG 60
consensus_18#1      ------------CACAGTCCTTGGGGCACGACANTTGCCCGGCAA--TNCGGGACACTCG 46
                                   *  *    *****  *** ** *     *   * *     *   *

consensus_18#0      CAGCAAGTGCTCAATTCTAACCGTCCTGGTGTTGGTGAACGTGATA-GGCGAGTTTCCAT 119
consensus_18#1      CT-CNAGAGCTCNAA-CCACTCCACGTGATCT--ACGGGCTCGATCCGGCCTCGATCAAC 102
                    *  * ** **** *  * *  *  * ** * *    *  *  ***  ***     ** * 

consensus_18#0      TGCTTCTAGCTAAGGCCGGTGACAGTGACCTAAATGAGGTG-CGCATTGGATTTGGAACA 178
consensus_18#1      TTCTTCCAGGACGAGCCGGACTCGCTGCCTCAGCCCAGACGATGCACTGTACCGTGGAGG 162
                    * **** **     *****   *  ** *  *    **  *  *** ** *    * *  

consensus_18#0      TCGTTCAGCGCACGGCGGGACGTACGGTTCCATCTTTATA-CGCCGCTGAACCGCGCCGA 237
consensus_18#1      TTATCCA-----CACCAACACGCAACTCTCCGGCTATCCGGCACCGCTCGGGCATGTCGA 217
                    *  * **     *  *   *** *    ***  ** *    * *****    *  * ***

consensus_18#0      --TGCGCACGTATTCTCGATCGAGACGGTGGACACGCTGATGCGATCCTTCTACAACTCC 295
consensus_18#1      CTTCTACATGAACTATGGGCGTAAGCAGCCCGGCTGCAAGACGGA--CGTCTGTAGCCAT 275
                      *   ** * * * * *    *  * *       **      **  * ***  * *   

consensus_18#0      AGCCATCCTGTGAGAATTATCATCCACGGATGGTTTAACAATGCCACCTCGCT-TGTGAT 354
consensus_18#1      GGCCGCTCGACCGAGTACTTTATCGAGTCGTTACGTAACACGACCAAAGGATTCTGGGGC 335
                     ***   *           * *** *    *    *****   ***      * ** *  

consensus_18#0      ACAGGGCATCAAGGATGCGTACCTCGATGCCGGCAGCTACAACGTGATCGGTGTGGATTG 414
consensus_18#1      GTCGGGTGTAACGATTACG--CCGAGAT-CCGGCAGCGC--ACGTGCTACA---ACATCA 387
                       ***  * * *  * **  **  *** ********    ***** *        **  

consensus_18#0      GGGCGTCGGTGCGGGTGAGTCCTACTTCCGTGCGTCACAGTACACGATCGCGGTCGGGTT 474
consensus_18#1      AGCAGCAGGCGGTGATGGGTGGTGAGTACTGGCA--GAAGAACATTACGGCCGGTGTGTA 445
                     *  *  ** *  * ** **  *   * *  **     ** ***  *  ** *  * ** 

consensus_18#0      GGTGGTGGCGGACCTGGTCAAGCAGCTCGTACGCTCCGGTATGGCCGAGCTGGACAGGCT 534
consensus_18#1      CACGGTCGAGACGCTGGCAGAGTCAC-CGTACGCGATGGGTTACGTTCATTAG-TAGCGT 503
                       *** * *   ****   **   * *******   **  *        * *  **  *

consensus_18#0      CTACCTGGTCGGCCACAGTCTCGGGGCACACATTGCCGGCAATGCGGGTCACGCGCTCAA 594
consensus_18#1      GTGTTACTTAAGTTATG---TCACGCCTCGTGT-GCAAGAAGTGTTAATCATGG---TAA 556
                     *      *  *  *     **  * * *   * **  * * **    *** *     **

consensus_18#0      AGCTCAACCACTCCACGTGATC-TACGGGCTCGATCCGGNCTCGATCAACTTCTTCCAGG 653
consensus_18#1      ATAACAGTAAATAAACGTCCTCATATAATGATAATGCAAA----AAAAANTANNAANAAA 612
                    *   **   * *  ****  ** **        ** *       *  ** *      *  

consensus_18#0      ACGAGCCGGACTCGCGCCTCAGCCAG 679
consensus_18#1      A-GGGCAGCATGTG------------ 625
                    * * ** * *   *