cluster # 1816

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Anopheles gambiae
cluster # 1816 cluster # 1816 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1816#0 length = 581 sequences # 1

consensus_1816#1 length = 472 sequences # 1

consensusID : consensus_1816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTTTCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGCCGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGCCCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCAACAATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAACGCACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTACGGTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTAATGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA]

[+] EMBL BM627610             [CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTTTCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGCCGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGCCCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCAACAATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAACGCACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTACGGTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTAATGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA]




>consensus_1816#0
CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTT
TCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGC
CGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGC
CCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCAACA
ATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAACG
CACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTACG
GTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTAA
TGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCGC
AGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGA
TGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA

consensusID : consensus_1816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [GCAGAATNGCCCCGAGGNTTAAAGCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGACCTTAGCAATCCCCTCGGGGCCGACTAACTTATCTAGAGCCTCCAAACACACGCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAACGATTAAAAAACCAGTTTACAGTACCGAAACCGTTAAGCGTTGTGTACTAAAGCCGGGTAGGGGAAGGAACCTAAAAACACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGTGCGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTAGCTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA]

[+] EMBL AL694230             [GCAGAATNGCCCCGAGGNTTAAAGCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGACCTTAGCAATCCCCTCGGGGCCGACTAACTTATCTAGAGCCTCCAAACACACGCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAACGATTAAAAAACCAGTTTACAGTACCGAAACCGTTAAGCGTTGTGTACTAAAGCCGGGTAGGGGAAGGAACCTAAAAACACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGTGCGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTAGCTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA]




>consensus_1816#1
GCAGAATNGCCCCGAGGNTTAAAGCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCA
AGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATA
AGTGGAGAACCGTGGACCTTAGCAATCCCCTCGGGGCCGACTAACTTATCTAGAGCCTCC
AAACACACGCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAA
CGATTAAAAAACCAGTTTACAGTACCGAAACCGTTAAGCGTTGTGTACTAAAGCCGGGTA
GGGGAAGGAACCTAAAAACACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGT
GCGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTA
GCTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1816#0      CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTT 60
consensus_1816#1      ---------------------------------------GCAGAATNGCCCCGAG-GNTT 20
                                                             *  **   **  ** * * **

consensus_1816#0      TCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGC 120
consensus_1816#1      AAAGCGTCCCTCCGCAG--CAGCAGCA-GCAGCAGC--AGCAGCAAGCGCAAGACAA-GC 74
                         * *     * ****  * ****** *   * **    ** *  *  *   *  * **

consensus_1816#0      CGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGC 180
consensus_1816#1      TAAGCAATCAGTTCGGCACGAT--GAATCTGCGGGACGTGTGGCA-ATAAGTGGAGAACC 131
                           **   ******  ** *   **  * *  ***  *** *  *  *     *   *

consensus_1816#0      CCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCA-AC 239
consensus_1816#1      GTGGACCTTA-GCAATCCC--CTCGGGGCCGACTAACTTATCTAGAGCCTCCAAACACAC 188
                        ****  ** ** **      *  ****  **   *  *  * * *   *  * ** **

consensus_1816#0      AATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAAC 299
consensus_1816#1      GCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAACGATTAAA 248
                          * ***  *  *      ** *   * * *     *     **     * * **** 

consensus_1816#0      GCACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTAC 359
consensus_1816#1      AAAC--CAGTTTACAGTACCGAAACCG--TTAAGCGTTGTGTACTAAAGCCGGGTAGGGG 304
                        **  *** **   ** ***     *  *  *****   ** * *  ** **  **   

consensus_1816#0      GGTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTA 419
consensus_1816#1      AAGGAACCTAAAAA---CACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGTG 361
                         *   * *       * *   **  *  ** *    *  *    *   *     *** 

consensus_1816#0      ATGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCG 479
consensus_1816#1      CGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTAG 421
                         *     **  ***  ** * ***   * **            * * ** *   *  *

consensus_1816#0      C--AGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGC-TAAGCAATCAGTTCGGC 536
consensus_1816#1      CTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA--------- 472
                      *  * * * *      * ****   * ** *    ** **** ******           

consensus_1816#0      ACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA 581
consensus_1816#1      ---------------------------------------------