cluster # 1825

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Anopheles gambiae
cluster # 1825 cluster # 1825 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1825#0 length = 719 sequences # 1

consensus_1825#1 length = 457 sequences # 1

consensusID : consensus_1825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [CACCGCCACCCAGCCAGTAGTAAGCCGCTCGCTGGCAGCTCAAGTGGGGCTTCTTCCGGCTGAACTATACTACCCCCCTCCCGAAACGCTCACTTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGCACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAGCTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAACCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCCGGCGATCAACACCTCCGGCTTCAGCAGGGGAATCCGAGCGAGCTCCCCGCGTCGGTGTGTTTCGCGCAAACACCCGCACACACGCACACAAACACTATAGCAAGAAGCGAGATAGTAGACGAGTGCAACGGAGGGATTGATGCACCGACCGTATCGATCTGGGTCACTTAGCTCTTAGCGGTCTAGCAGCGACTAGCACACATCCTCTGCCGAAACGACACCCGGACGAGAGAGCACGATGCCGGGCAATGGATTATTAACTCTACCAAACTGCGTAATGCAAATGTCGGCCGTTTTTCCGTGCTGGTCGCCCCCGTTAGTTCGATGACGCCAGTTAGAGAGGGGCCGCGGAAAACCTCTCGAGCCTCCTTTGTCGCTCGGTTGCTGCGACGGTGGTGTGGC]

[+] EMBL BX617032             [CACCGCCACCCAGCCAGTAGTAAGCCGCTCGCTGGCAGCTCAAGTGGGGCTTCTTCCGGCTGAACTATACTACCCCCCTCCCGAAACGCTCACTTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGCACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAGCTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAACCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCCGGCGATCAACACCTCCGGCTTCAGCAGGGGAATCCGAGCGAGCTCCCCGCGTCGGTGTGTTTCGCGCAAACACCCGCACACACGCACACAAACACTATAGCAAGAAGCGAGATAGTAGACGAGTGCAACGGAGGGATTGATGCACCGACCGTATCGATCTGGGTCACTTAGCTCTTAGCGGTCTAGCAGCGACTAGCACACATCCTCTGCCGAAACGACACCCGGACGAGAGAGCACGATGCCGGGCAATGGATTATTAACTCTACCAAACTGCGTAATGCAAATGTCGGCCGTTTTTCCGTGCTGGTCGCCCCCGTTAGTTCGATGACGCCAGTTAGAGAGGGGCCGCGGAAAACCTCTCGAGCCTCCTTTGTCGCTCGGTTGCTGCGACGGTGGTGTGGC]




>consensus_1825#0
CACCGCCACCCAGCCAGTAGTAAGCCGCTCGCTGGCAGCTCAAGTGGGGCTTCTTCCGGC
TGAACTATACTACCCCCCTCCCGAAACGCTCACTTGTCCTCCATCTTGGCCCGGCGGCCT
TGGACCGCGTACACCGCACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCC
GATGCCAGCATGGACAGCTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTG
CTGATGCGCCCGATGAACCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAAC
AGACAGATTAGCAGGCCGGCGATCAACACCTCCGGCTTCAGCAGGGGAATCCGAGCGAGC
TCCCCGCGTCGGTGTGTTTCGCGCAAACACCCGCACACACGCACACAAACACTATAGCAA
GAAGCGAGATAGTAGACGAGTGCAACGGAGGGATTGATGCACCGACCGTATCGATCTGGG
TCACTTAGCTCTTAGCGGTCTAGCAGCGACTAGCACACATCCTCTGCCGAAACGACACCC
GGACGAGAGAGCACGATGCCGGGCAATGGATTATTAACTCTACCAAACTGCGTAATGCAA
ATGTCGGCCGTTTTTCCGTGCTGGTCGCCCCCGTTAGTTCGATGACGCCAGTTAGAGAGG
GGCCGCGGAAAACCTCTCGAGCCTCCTTTGTCGCTCGGTTGCTGCGACGGTGGTGTGGC

consensusID : consensus_1825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [CTCCGCACAGACGGCTGCGTTCGGGCTGCCAGGCAGCTCCTTCCCGTCCGCAATGGCCGACGATTGCATCAGCTTCTGGTGGATGTTCTTTATCAGCACGGTTTTCGCGTACTCGGCCGCGTACTCGCCGCCGTGCCCGTCGAAGATGGCAAACAGGGAAATGCCGCTGCTGTTGATGTTTTCACTTATCACAAATCTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGCACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAGCTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAACCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCCGGCGATCAGCACCTCCGGCTTCCCCACGCGTCCGCGG]

[-] EMBL BM650487             [CTCCGCACAGACGGCTGCGTTCGGGCTGCCAGGCAGCTCCTTCCCGTCCGCAATGGCCGACGATTGCATCAGCTTCTGGTGGATGTTCTTTATCAGCACGGTTTTCGCGTACTCGGCCGCGTACTCGCCGCCGTGCCCGTCGAAGATGGCAAACAGGGAAATGCCGCTGCTGTTGATGTTTTCACTTATCACAAATCTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGCACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAGCTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAACCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCCGGCGATCAGCACCTCCGGCTTCCCCACGCGTCCGCGG]




>consensus_1825#1
CTCCGCACAGACGGCTGCGTTCGGGCTGCCAGGCAGCTCCTTCCCGTCCGCAATGGCCGA
CGATTGCATCAGCTTCTGGTGGATGTTCTTTATCAGCACGGTTTTCGCGTACTCGGCCGC
GTACTCGCCGCCGTGCCCGTCGAAGATGGCAAACAGGGAAATGCCGCTGCTGTTGATGTT
TTCACTTATCACAAATCTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGC
ACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAG
CTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAA
CCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCC
GGCGATCAGCACCTCCGGCTTCCCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1825#0      ------------------------------------------------------------
consensus_1825#1      CTCCGCACAGACGGCTGCGTTCGGGCTGCCAGGCAGCTCCTTCCCGTCCGCAATGGCCGA 60
                                                                                  

consensus_1825#0      ------------------------------------CACCGCCACCCAGCCAGTAGTAAG 24
consensus_1825#1      CGATTGCATCAGCTTCTGGTGGATGTTCTTTATCAGCACGGTTTTCGCGTACTCGGCCGC 120
                                                          *** *    *  *      *    

consensus_1825#0      CCGCTCGCTGGCA-GCTCAAGTGGGGCTTCTTCCGGCTGAACTATACTACCCCC------ 77
consensus_1825#1      GTACTCGCCGCCGTGCCCGTCGAAGATGGCAAACAGGGAAATGCCGCTGCTGTTGATGTT 180
                         ***** * *  ** *      *    *   * *   **     ** *          

consensus_1825#0      CTCCCGAAACGCTCACTTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGC 137
consensus_1825#1      TTCACTTATCACAAATCTGTCCTCCATCTTGGCCCGGCGGCCTTGGACCGCGTACACCGC 240
                       ** *  * * *  *  *******************************************

consensus_1825#0      ACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAG 197
consensus_1825#1      ACTGCCGGTCGTCCGCTCGTCCCAGCTGTGCTTCTCCGCGGCCGATGCCAGCATGGACAG 300
                      ************************************************************

consensus_1825#0      CTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAA 257
consensus_1825#1      CTTGCCGGACCGGCCGCCCGCCTTCCCGAGCCCGAGCGAGTTGCTGATGCGCCCGATGAA 360
                      ************************************************************

consensus_1825#0      CCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCC 317
consensus_1825#1      CCCGCGGCTCCATACCTCCGCTGCTTGCAGGTACAGGACGAACAGACAGATTAGCAGGCC 420
                      ************************************************************

consensus_1825#0      GGCGATCAACACCTCCGGCTTCAGCAGGGGAATCCGAGCGAGCTCCCCGCGTCGGTGTGT 377
consensus_1825#1      GGCGATCAGCACCTCCGGCTTCCCCACGCGTCCGCGG----------------------- 457
                      ******** *************  ** * *    **                        

consensus_1825#0      TTCGCGCAAACACCCGCACACACGCACACAAACACTATAGCAAGAAGCGAGATAGTAGAC 437
consensus_1825#1      ------------------------------------------------------------
                                                                                  

consensus_1825#0      GAGTGCAACGGAGGGATTGATGCACCGACCGTATCGATCTGGGTCACTTAGCTCTTAGCG 497
consensus_1825#1      ------------------------------------------------------------
                                                                                  

consensus_1825#0      GTCTAGCAGCGACTAGCACACATCCTCTGCCGAAACGACACCCGGACGAGAGAGCACGAT 557
consensus_1825#1      ------------------------------------------------------------
                                                                                  

consensus_1825#0      GCCGGGCAATGGATTATTAACTCTACCAAACTGCGTAATGCAAATGTCGGCCGTTTTTCC 617
consensus_1825#1      ------------------------------------------------------------
                                                                                  

consensus_1825#0      GTGCTGGTCGCCCCCGTTAGTTCGATGACGCCAGTTAGAGAGGGGCCGCGGAAAACCTCT 677
consensus_1825#1      ------------------------------------------------------------
                                                                                  

consensus_1825#0      CGAGCCTCCTTTGTCGCTCGGTTGCTGCGACGGTGGTGTGGC 719
consensus_1825#1      ------------------------------------------