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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1605 fasta sequence
[GCANCGAGACGCANGCTCGACGTCACCGACGACAGCNCACGNGGCGTCCGCGACAGTGNAGCAGCNCGGTGTCGNGCGCATTTGAGCCCTTTCAAGAAGGGGACCCCCAACGGAAAAATTTCACGGGCGCCCCNCCGGAAGGGGTTTATGAACAAACCGGGAAACTGGCCCCAAATGGGATTGTGNNGCCAAATTTAACTTTGGTCNCCNGACCCGTTTGATAAATAACGCAACATTCTACNGGTGTTCCGAAAAANACCGGAACGCGTAAAAAAGCAAACCCGGGGTTTAACCCAAGGTATCCCGCTTATTTCCGCAAGTTTTCCANCTTAGGGGGGGCGTTTACTACTCTACTCGGGAGGCATTATTTCCGAAATTTCCCGCAAGCTTAGTCTAGTTCATACTGGAGGAANCGCCCCGCTTTTGGGACCGCNTTANTAACTAAAGTACTATTATGGGTAGAGGCGCCATCCCACTGGAGNGGGCAAACTTTTATATNAGGGGGAAACAGTCTTACNTTCNGGGGGTTAAGGCAGTTTANCCACCCGTAGGGNTAACAGGNAGCCCTTTAAAGGGNGGTTTTACCCGAAACATTTAACCCAAAATTTTAACCGTTNATCATGTACTTTGGGGGTTNAGGGACCCCACCCATTATAATTACCCACGGGCGTGCAGCATTATAGGAGGCCGTANAGGGAAAACAGTTACCCGTAAACGCGCAATATAANGCTGCCCTTTTATAGGGGACGCCNNTTAAGGAGACAAANCAACANCGCCCATGGTCGCCCTGGGANCTCCCGCAGGTTTTAAAGGCTAAAGTCACGTCCCCTAGGNATGTCAAAAACTNTATAGGGCTGGGCGTTTATGGGTGCCGCTCCCTTTAACCCTGGGCATTGTGGTTGAAGATAAACGACCTGGGGGTTTTNATGATCAATGGACGCCTGTNGGTGCAANGTACAAGCTAGANACTCTAACGTNCCCTCTGAGGGTGAAAACATTTNAACCCCCGTTTTAACCCGCACGCCGNCAAAAACACACCCCTACAAAAGGGGTGGACCCCACCCCGCAGTATTGGTGAGGCATCGAAAACANGTTTTCCCCCACATTTAGGTGGTGGGTACGGAGGTCCCCCGTGGGCAAAAAAGCTNTTATACANAGTGTGTGAGACGAGGCCGTTATGGGGGGTGTACAAAACTCGTTTATCCCCGCAGGTGCGCTTTGGTGGTNGGCTTTTTACAAGCCCCCGGAAGCCATTTTTGGGCGATCGCCCCCATTACAATACGTAGTCATCCCTAANATACCCCGTAGTGCGTAAAACTAGAAACGCAANGACTATTATCCCCGCATTTTGGGGACGGGAGCGAAACGGAGCACGACCGCTAGCCACGAGAAAAAAACGTGACTATTCCCCGCNAAAGACGATTTTTCCCGAAGATTAATGATTCTCCCCNCAAGGAACGTCATGCTAGGTGGGGGTACAACAGTACCCCGGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGCCTCCCCTTATKNVKTG]
[+] EMBL AL934423 [GCANCGAGACGCANGCTCGACGTCACCGACGACAGCNCACGNGGCGTCCGCGACAGTGNAGCAGCNCGGTGTCGNGCGCATTTGAGCCCTTTCAAGAAGGGGACCCCCAACGGAAAAATTTCACGGGCGCCCCNCCGGAAGGGGTTTATGAACAAACCGGGAAACTGGCCCCAAATGGGATTGTGNNGCCAAATTTAACTTTGGTCNCCNGACCCGTTTGATAAATAACGCAACATTCTACNGGTGTTCCGAAAAANACCGGAACGCGTAAAAAAGCAAACCCGGGGTTTAACCCAAGGTATCCCGCTTATTTCCGCAAGTTTTCCANCTTAGGGGGGGCGTTTACTACTCTACTCGGGAGGCATTATTTCCGAAATTTCCCGCAAGCTTAGTCTAGTTCATACTGGAGGAANCGCCCCGCTTTTGGGACCGCNTTANTAACTAAAGTACTATTATGGGTAGAGGCGCCATCCCACTGGAGNGGGCAAACTTTTATATNAGGGGGAAACAGTCTTACNTTCNGGGGGTTAAGGCAGTTTANCCACCCGTAGGGNTAACAGGNAGCCCTTTAAAGGGNGGTTTTACCCGAAACATTTAACCCAAAATTTTAACCGTTNATCATGTACTTTGGGGGTTNAGGGACCCCACCCATTATAATTACCCACGGGCGTGCAGCATTATAGGAGGCCGTANAGGGAAAACAGTTACCCGTAAACGCGCAATATAANGCTGCCCTTTTATAGGGGACGCCNNTTAAGGAGACAAANCAACANCGCCCATGGTCGCCCTGGGANCTCCCGCAGGTTTTAAAGGCTAAAGTCACGTCCCCTAGGNATGTCAAAAACTNTATAGGGCTGGGCGTTTATGGGTGCCGCTCCCTTTAACCCTGGGCATTGTGGTTGAAGATAAACGACCTGGGGGTTTTNATGATCAATGGACGCCTGTNGGTGCAANGTACAAGCTAGANACTCTAACGTNCCCTCTGAGGGTGAAAACATTTNAACCCCCGTTTTAACCCGCACGCCGNCAAAAACACACCCCTACAAAAGGGGTGGACCCCACCCCGCAGTATTGGTGAGGCATCGAAAACANGTTTTCCCCCACATTTAGGTGGTGGGTACGGAGGTCCCCCGTGGGCAAAAAAGCTNTTATACANAGTGTGTGAGACGAGGCCGTTATGGGGGGTGTACAAAACTCGTTTATCCCCGCAGGTGCGCTTTGGTGGTNGGCTTTTTACAAGCCCCCGGAAGCCATTTTTGGGCGATCGCCCCCATTACAATACGTAGTCATCCCTAANATACCCCGTAGTGCGTAAAACTAGAAACGCAANGACTATTATCCCCGCATTTTGGGGACGGGAGCGAAACGGAGCACGACCGCTAGCCACGAGAAAAAAACGTGACTATTCCCCGCNAAAGACGATTTTTCCCGAAGATTAATGATTCTCCCCNCAAGGAACGTCATGCTAGGTGGGGGTACAACAGTACCCCGGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGCCTCCCCTTATKNVKTG]
consensusID : consensus_1828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence
[CCGATTGGGTAGGNNGGTAGTCAGGAGNATGGAAAAAAATAACACCCTGATGTAGTGGTGTAGACTGCTGATCTGCGCNCGCCCGAGAGTATTTTGTGTGTAGTGCGTCCAATGTGGTAGGATCGCCCCGCTAAAGAAGTGGNGTACCTCCCNGTGGTGGGGTGGGTCCCCCTAAAAAACAAAGAATGTCCTGTTGTGGGTGGAGTAATTATTATGCCGATCGCTAGACTCACAGAACTCNCCGTGGTAGTGGTGGCAGTATTTACCACTATGGTTGNATGAGTTGGTGAGGAGTACTGATTAGTCCCNCAATAAAATAGTACCGTGCCCCCGTGTGGGTGAGTGGTGTAGANGGGGAGTGGTGGNNGCGCATATTGTGGGTGAGTCGCCCCANTATATTGTGNGAGGGGCCGCACAGCATGAAGGAGTAGAAAAGATNTCANGTGTGGGTTAAAAGAACGAGCTTGGGGGGCGAAAAAACGCCGCNCCGGCGTAAGATAATGATGTATAAAATGATAGTAGTACANGGCTCCACGGTGTGGTAAACGCTAAANTAGTCCCGCCGAAAAGCTGGTTTATTCGCCATGGGGACATCAGTGGGTCAGCCTTATTTTCTCNCCAGTGGTGAGTAACCTGCNAAAGAAACCCCGAGGTGAGATGGGTNAANGNNGTGGTCGCCCCACAAATACNAAAATAGACGACTATTGTGGGTGGGCGGTAATTTACACTCAGCTACATGTGGTGAGTGGTGAGTGCCCAGCGCGGATTTATAGATATGATACAATAACATATGATGGAGAGTGAGTACCCCGATTAAAATGGTTTGGCAGGGTGTGTGAAAACGCACATAAGCTTGTTTGCCGCAAAAAGTAAAGTGTGAAGNACCAGTAAAGACGTAATATAGCTCCGGTGGATAGTATATGACTAAAAGTGATTTATTGTCGCCGGAAAAAATTTTATGAATTATTAGATCCCCATAAAGAACCACGTGGGGGCGACTTTATTGTGGGAGGCGCTTTAATACTCGGGGTGGTAGGTAGAGTAGACACTNTGGCTGNTATAAAAAGATNAAAACGCCCCTGGTGGGAATGAAAATGACAANAGCACGTAAGTAACGACCTCGAAAAAAAGTAACCGTCACTCCGGGGGGGGNAGACTTTGATAAATTAATAACGCAAGCCCCCTGGGTGTGGTGGGGCGGCCAGCGCTTTATATCCCGCGGGGGTGCCACTTTATGTGTGCGTATAAAAGAAAATACAGCCTCCATGNGTGAGTAGGAGGTACGGATGTATGATAAGATAAAAAGTGGTGATCGCCCCGTAATGANACAGTGGCCTATTGTGGGGATACTCCCATGGACATCGTGCTGACCCATCTTTTGGNGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGC]
[+] EMBL AL934422 [CCGATTGGGTAGGNNGGTAGTCAGGAGNATGGAAAAAAATAACACCCTGATGTAGTGGTGTAGACTGCTGATCTGCGCNCGCCCGAGAGTATTTTGTGTGTAGTGCGTCCAATGTGGTAGGATCGCCCCGCTAAAGAAGTGGNGTACCTCCCNGTGGTGGGGTGGGTCCCCCTAAAAAACAAAGAATGTCCTGTTGTGGGTGGAGTAATTATTATGCCGATCGCTAGACTCACAGAACTCNCCGTGGTAGTGGTGGCAGTATTTACCACTATGGTTGNATGAGTTGGTGAGGAGTACTGATTAGTCCCNCAATAAAATAGTACCGTGCCCCCGTGTGGGTGAGTGGTGTAGANGGGGAGTGGTGGNNGCGCATATTGTGGGTGAGTCGCCCCANTATATTGTGNGAGGGGCCGCACAGCATGAAGGAGTAGAAAAGATNTCANGTGTGGGTTAAAAGAACGAGCTTGGGGGGCGAAAAAACGCCGCNCCGGCGTAAGATAATGATGTATAAAATGATAGTAGTACANGGCTCCACGGTGTGGTAAACGCTAAANTAGTCCCGCCGAAAAGCTGGTTTATTCGCCATGGGGACATCAGTGGGTCAGCCTTATTTTCTCNCCAGTGGTGAGTAACCTGCNAAAGAAACCCCGAGGTGAGATGGGTNAANGNNGTGGTCGCCCCACAAATACNAAAATAGACGACTATTGTGGGTGGGCGGTAATTTACACTCAGCTACATGTGGTGAGTGGTGAGTGCCCAGCGCGGATTTATAGATATGATACAATAACATATGATGGAGAGTGAGTACCCCGATTAAAATGGTTTGGCAGGGTGTGTGAAAACGCACATAAGCTTGTTTGCCGCAAAAAGTAAAGTGTGAAGNACCAGTAAAGACGTAATATAGCTCCGGTGGATAGTATATGACTAAAAGTGATTTATTGTCGCCGGAAAAAATTTTATGAATTATTAGATCCCCATAAAGAACCACGTGGGGGCGACTTTATTGTGGGAGGCGCTTTAATACTCGGGGTGGTAGGTAGAGTAGACACTNTGGCTGNTATAAAAAGATNAAAACGCCCCTGGTGGGAATGAAAATGACAANAGCACGTAAGTAACGACCTCGAAAAAAAGTAACCGTCACTCCGGGGGGGGNAGACTTTGATAAATTAATAACGCAAGCCCCCTGGGTGTGGTGGGGCGGCCAGCGCTTTATATCCCGCGGGGGTGCCACTTTATGTGTGCGTATAAAAGAAAATACAGCCTCCATGNGTGAGTAGGAGGTACGGATGTATGATAAGATAAAAAGTGGTGATCGCCCCGTAATGANACAGTGGCCTATTGTGGGGATACTCCCATGGACATCGTGCTGACCCATCTTTTGGNGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1828#0 GCANCGAGACGCANGCTCGACGTCACCGACGACAGCNCACGNGGCGTCCGCGACAGTGNA 60
consensus_1828#1 -------------------CCGATTGGGTAGGNNGGTAGTCAGGAGNATGGAAAAAAATA 41
** * * * ** * * * * *
consensus_1828#0 GCAGCNCGGTGTCGNGCGCATTTGAGCCCTTTCAAGAAGGGGACCCCCAACGGAAAAATT 120
consensus_1828#1 ACACCCTGATGTAGTG-----GTGTAGACTGCTGATCTGCGCNCGCCC---GAGAGTATT 93
** * * *** * * ** ** * * * * *** * * ***
consensus_1828#0 TCACGGGCGCCCCNCCGGAAGGGGTTTATGAACAAACCGGGAAACTGGCCCCAAATGGGA 180
consensus_1828#1 TTGTGTGTAGTGCGTCCAATGTGG--TAGGATCGCCCCGCTAAAG-------AAGTGG-- 142
* * * * * * * ** ** ** * *** *** ** ***
consensus_1828#0 TTGTGNNGCCAAATTTAACTTTGGTCNCCNGACCCGTTTGATAAATAACGCAACATTCTA 240
consensus_1828#1 -NGTACCTCCCNGT---GGTGGGGTGGGTCCCCCTAAAAAACAAAGAATGT--CCTGTTG 196
** ** * * *** ** * *** ** * * * *
consensus_1828#0 CNGGTGTTCCGAAAAANAC-CGGAACGCGTAAAAAAGCAAACCCGGGGTTTAACCCAAGG 299
consensus_1828#1 TGGGTGGAGTAATTATTATGCCGATCGCTAGACTCACAGAACTCNCCGTGGTAGTGGTGG 256
**** * * * * ** *** * * *** * ** * **
consensus_1828#0 TATCCCGCTTATTTCCGCAAGTTTTCCANCTTAGGGGGGGCGTTTACTACTCTACTCGGG 359
consensus_1828#1 CAGT--ATTTACCACTATGGTTGNATGAGTTGGTGAGGAGTACTGATTAGT---CCCNCA 311
* *** * * * * * ** * * * ** * * *
consensus_1828#0 AGGCATTATTTCCGAAATTTCCCGCAAGCTTAGTCTAGTTCATACTGGAGGAANCGCCCC 419
consensus_1828#1 ATAAAATAGTACCGTGCCCCCGTGTGGG-TGAGTGGTGTAGANGG-GGAGTGGTGGNNGC 369
* * ** * *** * * * * *** ** * **** * *
consensus_1828#0 GCTTTTGGGACCGCNTTANTAACTAAAGTACTATTATGGGTAGAGGCGC-CATCCCACTG 478
consensus_1828#1 GCATATTG---TGGGTGAGTCGCCCCANTA-TATTGTGNGAGGGGCCGCACAGCATGAAG 425
** * * * * * * * * * ** **** ** * * * *** ** * *
consensus_1828#0 GAGNGGGCAAACTTTTATATNAGGGGGAAACAGTCTTACNTTCNGGGGGTTAAGGCAGTT 538
consensus_1828#1 GAGTAGAAAAGATNTCANGTGTGGGTTAAAAGAACGAGCTT--GGGGGGCGAAAAAACGC 483
*** * ** * * * * *** *** * * * ***** ** *
consensus_1828#0 TANCCACCCGTAGGGNTAACAGGNAGCCCTTTAAAGGGNGGTTTTACCCGAAACATTTAA 598
consensus_1828#1 CGCNCCGGCGTAAGATAATGATGTA-----TAAAATGATAGTAGTACANGGCTC------ 532
* **** * * * * * * *** * ** *** * *
consensus_1828#0 CCCAAAATTTTAACCGTTNATCATGTACTTTGGGGGTTNAGGGACCCCACCCATTATAAT 658
consensus_1828#1 CACGGTGTGGTAAACGCTAAA---NTAGTCCCGCCGAAAAGCTGGTTTATTCGCCATGGG 589
* * * *** ** * * ** * * * ** * * **
consensus_1828#0 TACCCACGGGCGTGCAGCATTATAGGAGGCCGTANAGGGAAAACAGTTACCCGTAAACGC 718
consensus_1828#1 GACATCAGTGGGT-CAGCCTTATTTTCTCNCCAGTGGTGAGTA-ACCTGCNAAAGAAACC 647
** * * ** **** **** * * ** * * * * ** *
consensus_1828#0 GCAATATAANGCTGCCCTTTTATAGGGGACGCCNNTTAAGGAGACAAANCAACANCGCCC 778
consensus_1828#1 CCGAGGTGAGA-TGGGTNAANGNNGTGGTCGCCCCACAAATACNAAAATAGACGACTATT 706
* * * * ** * ** **** ** * *** ** *
consensus_1828#0 ATGGTCGCCCTGGGANCTCC-CGCAGGTTTTAAAGGCTAAAGTCACGTCCCCTAGGNATG 837
consensus_1828#1 GTGGGTGGGCGGTAATTTACACTCAGCTACATGTGGTGAGTGGTGAGTGCCCAGCGCGGA 766
*** * * * * * * * *** * ** * * ** *** *
consensus_1828#0 TC---AAAAACTNTATAGGGCTGGGCGTTTATGGGTGC-CGCTCCCTTTAACCCTGGGCA 893
consensus_1828#1 TTTATAGATATGATACAATAACATATGATGGAGAGTGAGTACCCCGATTAAAATGGTTTG 826
* * * * ** * * * * *** * ** **** *
consensus_1828#0 TTGTGGTTGAAGATAAACGACCTGGGGGTTTTNATGATCAATGGACGCCTGTNGGTGCAA 953
consensus_1828#1 GCAGGGTGTGTGAAAACGCACATAAGCTTGTTTGCCGCAAAAAGTA------AAGTGTGA 880
*** ** ** ** * * * ** ** * *** *
consensus_1828#0 NGTACAAGCTAGANACTCTAACGTNCCCTCTGAGGGTGAAAACATTTNAACCCCCGTTTT 1013
consensus_1828#1 AGNACCAG-TAAAGACG-TAATATAGCTCCGGTGGAT-AGTATATGACTAAAAGTGATTT 937
* ** ** ** * ** *** * * * * ** * * * ** * * ***
consensus_1828#0 AACCCGCACGCCGNCAAAAACACACCCCTACAAAAGGGGTGGACCCCACCCCGCAGTA-- 1071
consensus_1828#1 ATTGT---CGCCGGAAAAAAT-----TTTATGAATTATTAGATCCCCATAAAGAACCACG 989
* ***** ***** ** ** * ***** * * *
consensus_1828#0 TTGGTGAGGCATCGAAAACANGTTTTCCCCCACATTTAGG-TGGTGGGTACGG-AGGTCC 1129
consensus_1828#1 TGGGGGCGACTTTATTGTGGGAGGCGCTTTAATACTCGGGGTGGTAGGTAGAGTAGACAC 1049
* ** * * * * * * * * ** **** **** * ** *
consensus_1828#0 CCCG--TGG-GCAAAAAAGCTNTTATACANAGTGTGTGAGACGAGGCCGTTATGGGGGGT 1186
consensus_1828#1 TNTGGCTGNTATAAAAAGATNAAAACGCCCCTGGTGGGAATGAAAATGACAANAGCACGT 1109
* ** ***** * * *** ** * * * **
consensus_1828#0 GTACAAAACTCGTTTATCCCCGCAGGTGCGCTTTGGTGGTNGGCTTTTTACAAGCCCCCG 1246
consensus_1828#1 AAGTAACGACCTCGAAAAAAAGTAACCGTCACTCCGGGGGGGGN-------AGACTTTGA 1162
** * * * * * * * ** ** * *
consensus_1828#0 GAAGCCATTTTTGGGCGATCGCCCCCATTACAATACG-TAGTCATCCCTAANATACCCCG 1305
consensus_1828#1 TAAATTAATAACG--CAAGCCCCCTGGGTGTGGTGGGGCGGCCAGCGCTT-TATATCCCG 1219
** * * * * * * *** * * * * ** * ** *** ****
consensus_1828#0 TAGTGCGTAAAACTAGAAACGCAANGACTATTATCCCCGCATTTTGGGGACGGGAGCGAA 1365
consensus_1828#1 CGG-GGGTGCCACTTTATGTGTGCGTATAAAAGAAAATACAGCCTCCATGNGTGAGT--- 1275
* * ** *** * * * * ** * * ***
consensus_1828#0 ACGGAGCACGACCGCTAGCCACGAGAAAAAAACGTGACTATTCCCCGCNAAAGACGATTT 1425
consensus_1828#1 AGGAGGTACGGATGTATGATAAGATAAAAA---GTGGTGATCGCCCCGTAATGANACAGT 1332
* * * *** * * * ** ***** *** ** *** ** ** *
consensus_1828#0 TTCCCGAAGATTAATGATTCTCCCCNCAAGGAACGTCATGCTAGGTGGGGGTACAACAGT 1485
consensus_1828#1 GGCCTATTG--TGGGGATACTCCC----ATGGACATCGTGCT-------GACCCATC--T 1377
** * * *** ***** * * ** ** **** * ** * *
consensus_1828#0 ACCCCGGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCT 1545
consensus_1828#1 TTTGGNGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCT 1437
******************************************************
consensus_1828#0 AGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGCCTCCCCTTATKNVKTG 1605
consensus_1828#1 AGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGC---------------- 1481
********************************************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||