cluster # 1829

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1829 cluster # 1829 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1829#0 length = 609 sequences # 1

consensus_1829#1 length = 564 sequences # 1

consensusID : consensus_1829#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAGAAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAACGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACACGTACGAGCTCAATCATGTAGAAGGGCGAACACACACACACAGTGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGGCAATTATCAAACGTATTAATAACACGCACAGAGCGAGAGAAAGAGTAATAGTGCAAAGGCCGAACGTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGATGATAATCTTTGAATTGCTCGAAGCGATTGCACCAAAATGGAAACGATCCGGCAGTAGGCGAAGTAGGGGCTCACGCGGCATTGTTCCAGAGAAGCATTTAGCATTTGGTTTTAAGTACCACTTTGTTCCAATCGT]

[+] EMBL BX614077             [GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAGAAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAACGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACACGTACGAGCTCAATCATGTAGAAGGGCGAACACACACACACAGTGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGGCAATTATCAAACGTATTAATAACACGCACAGAGCGAGAGAAAGAGTAATAGTGCAAAGGCCGAACGTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGATGATAATCTTTGAATTGCTCGAAGCGATTGCACCAAAATGGAAACGATCCGGCAGTAGGCGAAGTAGGGGCTCACGCGGCATTGTTCCAGAGAAGCATTTAGCATTTGGTTTTAAGTACCACTTTGTTCCAATCGT]




>consensus_1829#0
GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAG
AAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAA
CGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACACGTAC
GAGCTCAATCATGTAGAAGGGCGAACACACACACACAGTGCTAGCTTGTAGGGAAAAGGG
GTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGC
GTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGGCAATT
ATCAAACGTATTAATAACACGCACAGAGCGAGAGAAAGAGTAATAGTGCAAAGGCCGAAC
GTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGATGATAAT
CTTTGAATTGCTCGAAGCGATTGCACCAAAATGGAAACGATCCGGCAGTAGGCGAAGTAG
GGGCTCACGCGGCATTGTTCCAGAGAAGCATTTAGCATTTGGTTTTAAGTACCACTTTGT
TCCAATCGT

consensusID : consensus_1829#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [TCGCCCCGGTTTAAAACACACACACACGTACGAGCTCAATCATGTAGAATGGGCGAACACACACACACACAGGGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGCACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGACACAGTTGGTCAGCAATTAACAAACGTATTAATAACACGCACAGAACGAGGGATAAGAGTAATAGTGCAATGGCCGAACGAGCATAGTAGATAATTAAATGGTTTTGTTAGATTAGCTATTTGGCTAAATGATAATCTTTGAATTGCTCGAAGCGATTGCACCCAAAATGGAAACGATCCGGCAGTCAGCAGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAGGAAGAAGCCACTTTAGCCATTTGGGTTTAAGTACNCAATTATGGTTCCAATCGGTTTTGGANCGTGCCGTTANCAACCTTGGCGCCTTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAGTCTGATGAAATGTCTGCTCTCTCT]

[+] EMBL AL694287             [TCGCCCCGGTTTAAAACACACACACACGTACGAGCTCAATCATGTAGAATGGGCGAACACACACACACACAGGGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGCACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGACACAGTTGGTCAGCAATTAACAAACGTATTAATAACACGCACAGAACGAGGGATAAGAGTAATAGTGCAATGGCCGAACGAGCATAGTAGATAATTAAATGGTTTTGTTAGATTAGCTATTTGGCTAAATGATAATCTTTGAATTGCTCGAAGCGATTGCACCCAAAATGGAAACGATCCGGCAGTCAGCAGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAGGAAGAAGCCACTTTAGCCATTTGGGTTTAAGTACNCAATTATGGTTCCAATCGGTTTTGGANCGTGCCGTTANCAACCTTGGCGCCTTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAGTCTGATGAAATGTCTGCTCTCTCT]




>consensus_1829#1
TCGCCCCGGTTTAAAACACACACACACGTACGAGCTCAATCATGTAGAATGGGCGAACAC
ACACACACACAGGGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGT
TAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGCACGTGTGCATAAGTTTCGTTTAAT
GTCAATCAATGCCGGACACAGTTGGTCAGCAATTAACAAACGTATTAATAACACGCACAG
AACGAGGGATAAGAGTAATAGTGCAATGGCCGAACGAGCATAGTAGATAATTAAATGGTT
TTGTTAGATTAGCTATTTGGCTAAATGATAATCTTTGAATTGCTCGAAGCGATTGCACCC
AAAATGGAAACGATCCGGCAGTCAGCAGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAG
GAAGAAGCCACTTTAGCCATTTGGGTTTAAGTACNCAATTATGGTTCCAATCGGTTTTGG
ANCGTGCCGTTANCAACCTTGGCGCCTTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAG
TCTGATGAAATGTCTGCTCTCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1829#0      GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAG 60
consensus_1829#1      ------------------------------------------------------------
                                                                                  

consensus_1829#0      AAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAA 120
consensus_1829#1      ------------------------------------------------------------
                                                                                  

consensus_1829#0      CGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACAC--GT 178
consensus_1829#1      -------------------------------TCGCCCCGGTTTAAAACACACACACACGT 29
                                                       *  **    **************  **

consensus_1829#0      ACGAGCTCAATCATGTAGAA-GGGCGAACACACACACACA--GTGCTAGCTTGTAGGGAA 235
consensus_1829#1      ACGAGCTCAATCATGTAGAATGGGCGAACACACACACACACAGGGCTAGCTTGTAGGGAA 89
                      ******************** *******************  * ****************

consensus_1829#0      AAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTA 295
consensus_1829#1      AAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTA 149
                      ************************************************************

consensus_1829#0      AGTGCGTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGG 355
consensus_1829#1      AGTGCGCACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGACACAGTTGGTCAG 209
                      ****** *************************************** ******** ** *

consensus_1829#0      CAATTATCAAACGTATTAATAACACGCACAGAGCGAGAGA-AAGAGTAATAGTGCAAAGG 414
consensus_1829#1      CAATTAACAAACGTATTAATAACACGCACAGAACGAGGGATAAGAGTAATAGTGCAATGG 269
                      ****** ************************* **** ** **************** **

consensus_1829#0      CCGAACGTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGAT 474
consensus_1829#1      CCGAACGAGCATAGTAGATAATTAAATGGTTTTGTTAGATTAGCTATTTGGC---TAAAT 326
                      *******  *********************** ***************** *   ** **

consensus_1829#0      GATAATCTTTGAATTGCTCGAAGCGATTGCACC-AAAATGGAAACGATCCGGCAGTAGGC 533
consensus_1829#1      GATAATCTTTGAATTGCTCGAAGCGATTGCACCCAAAATGGAAACGATCCGGCAGTCAGC 386
                      ********************************* **********************  **

consensus_1829#0      G--AAGTAGGGGCTCACGC-GGCATTGTTCCAGAGAAGCA-----TTTAGC-ATTTGGTT 584
consensus_1829#1      AGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAGGAAGAAGCCACTTTAGCCATTTGGGT 446
                         *********** * *  ** * ** ***   **** *     ****** ****** *

consensus_1829#0      TTAAGTACCACTTT---GTTCCAATCGT-------------------------------- 609
consensus_1829#1      TTAAGTACNCAATTATGGTTCCAATCGGTTTTGGANCGTGCCGTTANCAACCTTGGCGCC 506
                      ********    **   **********                                 

consensus_1829#0      ----------------------------------------------------------
consensus_1829#1      TTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAGTCTGATGAAATGTCTGCTCTCTCT 564