cluster # 1836

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Anopheles gambiae
cluster # 1836 cluster # 1836 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1836#0 length = 590 sequences # 1

consensus_1836#1 length = 515 sequences # 1

consensusID : consensus_1836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCATTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACTAAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAGTGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCGATGCCATCCGTACGGTGGGGCAGGAGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG]

[+] EMBL BX620292             [TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCATTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACTAAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAGTGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCGATGCCATCCGTACGGTGGGGCAGGAGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG]




>consensus_1836#0
TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCA
TTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACT
AAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAG
TGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGG
ACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCA
TCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACG
GCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAA
TATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGG
CGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCGATGCCATCCGTACGGTGGGGCAGG
AGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG

consensusID : consensus_1836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [CTCGAGCAGATCGGCCACGAGGCTGAACCCCCTCGAAACCGGCAGGACGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCATCCGCACGGTGGGGCAGGAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTACGGCAAGGTGGCGGAGACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTCACCGTACGCAGTGTGCCAAGATGTACGGGTACTGG]

[+] EMBL BX469395             [CTCGAGCAGATCGGCCACGAGGCTGAACCCCCTCGAAACCGGCAGGACGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCATCCGCACGGTGGGGCAGGAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTACGGCAAGGTGGCGGAGACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTCACCGTACGCAGTGTGCCAAGATGTACGGGTACTGG]




>consensus_1836#1
CTCGAGCAGATCGGCCACGAGGCTGAACCCCCTCGAAACCGGCAGGACGGTTCATATTTG
GCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACG
TTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAG
ATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAG
GTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGAT
CTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCAT
CCGCACGGTGGGGCAGGAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTA
CGGCAAGGTGGCGGAGACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTC
ACCGTACGCAGTGTGCCAAGATGTACGGGTACTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1836#0      TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCA 60
consensus_1836#1      ------------------------------------------------------------
                                                                                  

consensus_1836#0      TTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACT 120
consensus_1836#1      ------------------------------------------------------------
                                                                                  

consensus_1836#0      AAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAG 180
consensus_1836#1      ------------------------------------------CTCGAGCAGATCGGCCA- 17
                                                                 **  *  *** **  * 

consensus_1836#0      TGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGG 240
consensus_1836#1      CGAGGCTGAACCCCCTCGAAACCGG-CAGGACGGTTCATATTTGGCGGAATTTCTGCTGG 76
                       *   ****   *   *   ** ** ** ** ****************************

consensus_1836#0      ACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCA 300
consensus_1836#1      ACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACGTTCAACACGTCGCGCA 136
                      **************************************** *******************

consensus_1836#0      TCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACG 360
consensus_1836#1      TCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACG 196
                      ************************************************************

consensus_1836#0      GCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAA 420
consensus_1836#1      GCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAA 256
                      ************************************************************

consensus_1836#0      TATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGG 480
consensus_1836#1      TATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGG 316
                      ************************************************************

consensus_1836#0      CGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCG-ATGCCATCCGTACGGTGGGGCAG 539
consensus_1836#1      CGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCATCCGCACGGTGGGGCAG 376
                      ************************* ********** ********** ************

consensus_1836#0      GAGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG--------- 590
consensus_1836#1      GAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTACGGCAAGGTGGCGGAG 436
                      ******************** ******************************         

consensus_1836#0      ------------------------------------------------------------
consensus_1836#1      ACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTCACCGTACGCAGTGTGC 496
                                                                                  

consensus_1836#0      -------------------
consensus_1836#1      CAAGATGTACGGGTACTGG 515