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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGGATAGATGACGGCAGGCGCGCGCCTAAGATGTGCGGATGTTGATGTAAGACTGGCCCTCCTCCTGCGTGTGTGATTGCCAAGGCATCGAAAACGCGGGTGGTTGCGAAATCCGTGCGAACTGAAAGTCTGCTTTAGGGAAACGAAATGGAAGTTTACTTTCGCTTTTCTGTTTAGTCTATCACTAACTACAAGCCACTAAGATTAGCAAGATCTGCATGACGTGTAGTGCACGGCAGGTGCAGCGAATCGGGCAACTCGGAGGAAGGAAGCTCGGAATCGATCAATCATTATTGTGATTAGCAGTAGCAAAGGCAACGTTTGTAACTGAAGCGAAGCGAATGAAAGTGTCGTATAAAGATAATTTATTGAAATTTTTTAAACAGTTTTGCCCACTCCAATGAGCGAGCGTGGTAGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCCGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATC]
[+] EMBL BM592047 [CCGGATAGATGACGGCAGGCGCGCGCCTAAGATGTGCGGATGTTGATGTAAGACTGGCCCTCCTCCTGCGTGTGTGATTGCCAAGGCATCGAAAACGCGGGTGGTTGCGAAATCCGTGCGAACTGAAAGTCTGCTTTAGGGAAACGAAATGGAAGTTTACTTTCGCTTTTCTGTTTAGTCTATCACTAACTACAAGCCACTAAGATTAGCAAGATCTGCATGACGTGTAGTGCACGGCAGGTGCAGCGAATCGGGCAACTCGGAGGAAGGAAGCTCGGAATCGATCAATCATTATTGTGATTAGCAGTAGCAAAGGCAACGTTTGTAACTGAAGCGAAGCGAATGAAAGTGTCGTATAAAGATAATTTATTGAAATTTTTTAAACAGTTTTGCCCACTCCAATGAGCGAGCGTGGTAGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCCGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATC]
consensusID : consensus_1848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[AATCCCCCGAGGTAAAGTGTCGTATAAGGATATTTATGAAATTTTTTAACAGATTTGCCCACTTCAATGAGCGAGCGAGGTGGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCAGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATCACGAATGAAACGAGCGAGTTTTTCGATGATTGTTGTTGTTAAGCGATATAAAATATCCGGCTCCTGCAGAACCAATAATACGCAAATCGGGAGGACGATCGAGTCGAGGATCACCTTCTTGAGGGTTATGGGGTGTGAGGGT]
[+] EMBL AL694395 [AATCCCCCGAGGTAAAGTGTCGTATAAGGATATTTATGAAATTTTTTAACAGATTTGCCCACTTCAATGAGCGAGCGAGGTGGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCAGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATCACGAATGAAACGAGCGAGTTTTTCGATGATTGTTGTTGTTAAGCGATATAAAATATCCGGCTCCTGCAGAACCAATAATACGCAAATCGGGAGGACGATCGAGTCGAGGATCACCTTCTTGAGGGTTATGGGGTGTGAGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1848#0 CCGGATAGATGACGGCAGGCGCGCGCCTAAGATGTGCGGATGTTGATGTAAGACTGGCCC 60
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 TCCTCCTGCGTGTGTGATTGCCAAGGCATCGAAAACGCGGGTGGTTGCGAAATCCGTGCG 120
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 AACTGAAAGTCTGCTTTAGGGAAACGAAATGGAAGTTTACTTTCGCTTTTCTGTTTAGTC 180
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 TATCACTAACTACAAGCCACTAAGATTAGCAAGATCTGCATGACGTGTAGTGCACGGCAG 240
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 GTGCAGCGAATCGGGCAACTCGGAGGAAGGAAGCTCGGAATCGATCAATCATTATTGTGA 300
consensus_1848#1 ------------------------------------------------------------
consensus_1848#0 TTAGCAGTAGCAAAGGCAACGTTTGTAACTGAAGCGAAGCGAATGAAAGTGTCGTATAAA 360
consensus_1848#1 --------------------------------AATCCCCCGAGGTAAAGTGTCGTATAAG 28
* *** **************
consensus_1848#0 GATAATTTATTGAAATTTTTTAAACAGTTTTGCCCACTCCAATGAGCGAGCGTGGTAGAA 420
consensus_1848#1 GATA-TTTAT-GAAATTTTTTAA-CAGATTTGCCCACTTCAATGAGCGAGCGAGGTGGAA 85
**** ***** ************ *** ********** ************* *** ***
consensus_1848#0 CGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATAT 480
consensus_1848#1 CGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATAT 145
************************************************************
consensus_1848#0 GTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAA 540
consensus_1848#1 GTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAA 205
************************************************************
consensus_1848#0 ACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCCGGATTTGTGTACAGT 600
consensus_1848#1 ACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCAGGATTTGTGTACAGT 265
******************************************** ***************
consensus_1848#0 TTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACG 660
consensus_1848#1 TTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACG 325
************************************************************
consensus_1848#0 GATC-------------------------------------------------------- 664
consensus_1848#1 GATCACGAATGAAACGAGCGAGTTTTTCGATGATTGTTGTTGTTAAGCGATATAAAATAT 385
****
consensus_1848#0 ------------------------------------------------------------
consensus_1848#1 CCGGCTCCTGCAGAACCAATAATACGCAAATCGGGAGGACGATCGAGTCGAGGATCACCT 445
consensus_1848#0 --------------------------
consensus_1848#1 TCTTGAGGGTTATGGGGTGTGAGGGT 471
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||