cluster # 1851

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Anopheles gambiae
cluster # 1851 cluster # 1851 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1851#0 length = 581 sequences # 1

consensus_1851#1 length = 199 sequences # 1

consensusID : consensus_1851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGGGCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGAGACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAAAAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACAGTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTGTAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCCCTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACACGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT]

[+] EMBL BM576314             [CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGGGCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGAGACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAAAAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACAGTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTGTAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCCCTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACACGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT]




>consensus_1851#0
CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGG
GCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGA
GACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAA
AAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAAC
ATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACA
GTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTG
TAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCC
CTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACA
CGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT

consensusID : consensus_1851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [CCGGTTGATTGTAAGAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACAGACACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA]

[+] EMBL BM598449             [CCGGTTGATTGTAAGAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACAGACACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA]




>consensus_1851#1
CCGGTTGATTGTAAGAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTT
AAATAATAGAAAACATAATAGCGATCACACACAGACACAGACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1851#0      CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGG 60
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      GCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGA 120
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      GACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAA 180
consensus_1851#1      ----------------------------------------------CCGGTTGATTGTAA 14
                                                                     * ***********

consensus_1851#0      AAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAAC 240
consensus_1851#1      GAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAAC 74
                       ***********************************************************

consensus_1851#0      ATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACAC 300
consensus_1851#1      ATAATAGCGATCACACACAGACACAGACACACACACACACACACACACACACACACACAC 134
                      ******************* ***** **********************************

consensus_1851#0      ACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACA 360
consensus_1851#1      ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC 194
                      *************** **  *****   *******   ****    *      *      

consensus_1851#0      GTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTG 420
consensus_1851#1      ACACA------------------------------------------------------- 199
                          *                                                       

consensus_1851#0      TAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCC 480
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      CTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACA 540
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      CGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT 581
consensus_1851#1      -----------------------------------------